; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001051 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001051
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpolyadenylate-binding protein RBP47-like
Genome locationscaffold8:36163383..36164950
RNA-Seq ExpressionSpg001051
SyntenySpg001051
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145357.2 polyadenylate-binding protein RBP47 [Cucumis sativus]1.3e-3391.46Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH--ATAAAVNGSS
        RKNAEDAIQGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQ YGGYGGYYSVPQHQD NMH  A AAAVNGSS
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH--ATAAAVNGSS

XP_022148600.1 polyadenylate-binding protein RBP47 [Momordica charantia]4.6e-3492.59Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAA-VNGSS
        RKNAEDAIQGLNG VIGKQT+RLSWGR+TGNKQWRGDSNNQWNGGRYGGQGYGGY GYYSVPQHQDTNM+ATAAA VNGSS
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAA-VNGSS

XP_022943942.1 polyadenylate-binding protein RBP47-like [Cucurbita moschata]1.3e-3391.25Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS
        RKNAEDAIQGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQGYGGYGGYY +PQHQD NMHA AAAVNG+S
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS

XP_022986538.1 polyadenylate-binding protein RBP47-like [Cucurbita maxima]1.9e-3592.5Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS
        RKNAEDAIQGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYS+PQHQD NMHA AAAVNG+S
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS

XP_038901011.1 polyadenylate-binding protein RBP47 [Benincasa hispida]7.1e-3592.5Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS
        RKNAEDAIQGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQ YGGYGGYYSVPQHQD NMH TAA+VNGSS
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS

TrEMBL top hitse value%identityAlignment
A0A0A0LKZ0 Uncharacterized protein3.2e-3391.36Show/hide
Query:  KNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH--ATAAAVNGSS
        KNAEDAIQGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQ YGGYGGYYSVPQHQD NMH  A AAAVNGSS
Subjt:  KNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH--ATAAAVNGSS

A0A1S3C9N4 polyadenylate-binding protein RBP475.5e-3386.9Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH----ATAAAVNGSS
        RKNAEDA+QGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQ YGGYGGYYSVPQHQD N+H    A AAAVNGSS
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH----ATAAAVNGSS

A0A6J1D3C6 polyadenylate-binding protein RBP472.2e-3492.59Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAA-VNGSS
        RKNAEDAIQGLNG VIGKQT+RLSWGR+TGNKQWRGDSNNQWNGGRYGGQGYGGY GYYSVPQHQDTNM+ATAAA VNGSS
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAA-VNGSS

A0A6J1FUF1 polyadenylate-binding protein RBP47-like6.5e-3491.25Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS
        RKNAEDAIQGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQGYGGYGGYY +PQHQD NMHA AAAVNG+S
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS

A0A6J1JGT7 polyadenylate-binding protein RBP47-like9.0e-3692.5Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS
        RKNAEDAIQGLNG VIGKQTVRLSWGR+TGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYS+PQHQD NMHA AAAVNG+S
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS

SwissProt top hitse value%identityAlignment
F4I3B3 Polyadenylate-binding protein RBP47A1.0e-1562.96Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHAT-AAAVNGSS
        R++AE+AI  LNG VIGK TVRLSWGR+  NKQWR DS NQWNGG   GQGY    GY     +QD+NM+AT AAAV G+S
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHAT-AAAVNGSS

Q0WW84 Polyadenylate-binding protein RBP47B2.2e-1562.86Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH
        RK+AEDAI+ LNG VIGK TVRLSWGR+  NKQWRGDS  QWNGG   G GY   GGY +   H   N H
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH

Q9LEB3 Polyadenylate-binding protein RBP474.8e-1860Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS
        R +A++AIQ L+GA+IGKQ VRLSWGR+  NKQ R DS +QWNGG  G Q YGGYG  Y   Q+QD+ M+AT AA   SS
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS

Q9SX79 Polyadenylate-binding protein RBP47C1.3e-1258.9Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA
        R NAE+A++ LNG VIGKQTVRLSWGR   NKQ R    NQW    YGGQ Y GYG  Y VPQ  D  M+  A
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA

Q9SX80 Polyadenylate-binding protein RBP47C'1.3e-1258.9Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA
        R NAE+A++ LNG VIGKQTVRLSWGR   NKQ R    NQW    YGGQ Y GYG  Y VPQ  D  M+  A
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA

Arabidopsis top hitse value%identityAlignment
AT1G47490.1 RNA-binding protein 47C9.6e-1458.9Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA
        R NAE+A++ LNG VIGKQTVRLSWGR   NKQ R    NQW    YGGQ Y GYG  Y VPQ  D  M+  A
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA

AT1G47500.1 RNA-binding protein 47C'9.6e-1458.9Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA
        R NAE+A++ LNG VIGKQTVRLSWGR   NKQ R    NQW    YGGQ Y GYG  Y VPQ  D  M+  A
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATA

AT1G49600.1 RNA-binding protein 47A7.1e-1762.96Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHAT-AAAVNGSS
        R++AE+AI  LNG VIGK TVRLSWGR+  NKQWR DS NQWNGG   GQGY    GY     +QD+NM+AT AAAV G+S
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHAT-AAAVNGSS

AT3G19130.1 RNA-binding protein 47B1.6e-1662.86Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH
        RK+AEDAI+ LNG VIGK TVRLSWGR+  NKQWRGDS  QWNGG   G GY   GGY +   H   N H
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMH

AT4G27000.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.7e-0741.03Show/hide
Query:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNG
        R  AE A+  LNG  +G Q++RLSWGR+  NKQ + D      GG Y G    GY  Y   P  QD N +    A  G
Subjt:  RKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTATCCTTACATTTTTCTTTTCCTTTTTTGTAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAGCAGTTATTGGAAAGCAAACTGTTCGTCTTTCCTG
GGGTCGTACTACAGGGAATAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGGCGTTATGGAGGTCAAGGTTATGGTGGATATGGTGGCTACTACTCTGTAC
CACAGCATCAGGACACAAACATGCATGCCACAGCTGCTGCAGTTAATGGGTCATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTATCCTTACATTTTTCTTTTCCTTTTTTGTAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAGCAGTTATTGGAAAGCAAACTGTTCGTCTTTCCTG
GGGTCGTACTACAGGGAATAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGGCGTTATGGAGGTCAAGGTTATGGTGGATATGGTGGCTACTACTCTGTAC
CACAGCATCAGGACACAAACATGCATGCCACAGCTGCTGCAGTTAATGGGTCATCTTGA
Protein sequenceShow/hide protein sequence
MTYPYIFLFLFCRKNAEDAIQGLNGAVIGKQTVRLSWGRTTGNKQWRGDSNNQWNGGRYGGQGYGGYGGYYSVPQHQDTNMHATAAAVNGSS