CuGenDBv2

Gene ID	Spg001068
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Histone H2B
Genome location	scaffold8:44611566..44612504
RNA-Seq Expression	Spg001068
Synteny	Spg001068
Gene Ontology terms	GO:0006334 - nucleosome assembly (biological process) GO:0000786 - nucleosome (cellular component) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR000558 - Histone H2B IPR007125 - Histone H2A/H2B/H3 IPR009072 - Histone-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143093.1 histone H2B [Cucumis sativus]

4.2e-62

97.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKA+KKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

XP_008448382.1 PREDICTED: histone H2B [Cucumis melo]

7.2e-62

97.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKA+KKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

XP_022148381.1 histone H2B.11-like [Momordica charantia]

1.2e-61

97.86

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Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEKKPASDK AEEKK+VAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

XP_028052986.1 histone H2B-like [Camellia sinensis]

1.2e-61

97.14

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Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEKKPAS+KPAEEKK+VAEK PAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

XP_038900415.1 histone H2B [Benincasa hispida]

3.2e-62

97.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPK++KKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHC9 Histone H2B

2.0e-62

97.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKA+KKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

A0A1S3BIZ0 Histone H2B

3.5e-62

97.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKA+KKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

A0A5D3DK48 Histone H2B

3.5e-62

97.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKA+KKPAEKKPASDKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

A0A6J1D571 Histone H2B

6.0e-62

97.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEKKPASDK AEEKK+VAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

A0A6P3ZH56 Histone H2B

1.3e-61

96.43

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

SwissProt top hits

e value

%identity

Alignment

O22582 Histone H2B

4.1e-60

93.57

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEK     KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

O23629 Histone H2B.6

4.3e-57

91.43

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Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAP+AEKKPAEKKPA++KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LA ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

P40283 Histone H2B.11

5.0e-58

92.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEKKPAS+KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQE+SKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

Q1S9I9 Probable histone H2B.1

1.7e-58

90.71

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPK EKKPAEKKPA +K    K +VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

Q1SWQ1 Probable histone H2B.2

2.5e-57

89.29

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPK EKKPAEKKPA +K    K +VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        L QESS+LARYNKKPTITSREIQTAVRLVLPGELAKH VS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

Arabidopsis top hits

e value

%identity

Alignment

AT1G07790.1 Histone superfamily protein

1.4e-55

87.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAP+AEKKPAEKK A+++P EE K+ AEKAPAEKKPKAGKKLP +    AGDKKKKR+KK+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

AT2G28720.1 Histone superfamily protein

3.7e-56

88.57

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKA KKPAEKKPA   PAEE+K VAEKAPAEKKPKAGKKLPKE      +KKKKR KKS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQE+SKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

AT3G45980.1 Histone superfamily protein

3.0e-58

91.43

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAP+AEKKPAEKKPA++KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LA ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

AT3G46030.1 Histone superfamily protein

8.2e-56

89.29

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEKKP       E+KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LA ESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

AT5G59910.1 Histone superfamily protein

3.6e-59

92.86

Show/hide

Query:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAPKAEKKPAEKKPAS+KP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
        LAQE+SKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS
Subjt:  LAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCACCAAAGGCTGAGAAGAAACCCGCCGAGAAGAAGCCGGCCTCCGACAAGCCAGCCGAGGAGAAGAAGTCCGTCGCCGAGAAAGCTCCGGCGGAGAAGAAGCCCAA
GGCCGGGAAGAAGCTACCGAAGGAAGGCGGCGCTGCTGCTGGAGACAAGAAGAAGAAGAGAACGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTGCTGA
AGCAGGTTCATCCAGACATCGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCATCTAAGTTGGCTCGC
TACAACAAGAAGCCCACCATCACTTCTCGGGAGATCCAGACCGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTTAGTGGGTATTTGATTTTTAGCAG
TAAGGAACAATTCCCCTATGAATTTGATGGGTTTGGTATAGCTGTTGCTATAAGATTATCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAPKAEKKPAEKKPASDKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLAR
YNKKPTITSREIQTAVRLVLPGELAKHAVSGYLIFSSKEQFPYEFDGFGIAVAIRLS

Spg001068 (gene) of Sponge gourd (cylindrica) v1 genome