CuGenDBv2

Gene ID	Spg001098
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	NERD domain-containing protein
Genome location	scaffold8:35699199..35707344
RNA-Seq Expression	Spg001098
Synteny	Spg001098
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148081.1 uncharacterized protein LOC101217532 [Cucumis sativus]

3.2e-82

87.03

Show/hide

Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFPSEVITYDQWMQLKP H S SGWMKGAFRGKKE QEEPLDQ+LKAILGTAPMWDKLELKGKYILGDFLEF+GKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        + LRDIKRSKISH+TIQKTSMLGFAPTRLQVLYAPRDYRSG S+SASEWREVTVRSSTEILFQPQNSTK RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

XP_008459170.1 PREDICTED: uncharacterized protein LOC103498367 [Cucumis melo]

2.4e-82

87.03

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Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFPSEVITYDQWMQLKP H S SGWMKGAFRGKKELQEEPLDQ+LKAILGTAPMWDKLELKGKYILGDFLEF+GKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        + LRDIKRSKISH+TIQKTSMLGFAPTRLQVLYAPRDYRSG S+S+SEWREVTVRSSTEILFQPQNSTK RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

XP_022943551.1 uncharacterized protein LOC111448288 [Cucurbita moschata]

4.3e-79

83.24

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Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFP EV TYDQWMQLKP H S SGWMKGAFRGKKELQ+EPLDQ+LKAILGTAPMWDKLELKGKYILG+FLEFKGKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        +DLRDIKRSKISH+TIQKTSMLGFAPTRLQVLY PRDYRSG  +  SEW+EVTVRSSTEILFQPQNS+K RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

XP_022986572.1 uncharacterized protein LOC111484272 [Cucurbita maxima]

4.3e-79

83.24

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Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFP EV TYDQWMQLKP H S SGWMKGAFRGKKELQ+EPLDQ+LKAILGTAPMWDKLELKGKYILG+FLEFKGKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        +DLRDIKRSKISH+TIQKTSMLGFAPTRLQVLY PRDYRSG  +  SEW+EVTVRSSTEILFQPQNS+K RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

XP_038901981.1 uncharacterized protein LOC120088636 [Benincasa hispida]

3.2e-82

87.57

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Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFPSEVITYDQWMQLKP H S SGWMKGAFRGKKELQEEPLDQ+LKAILGTAPMWDKLELKGKYILGDFLEFKGK EDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        + LRDIKRSKISH+TIQKTSMLGFAPTRLQVLYAPRDYRSG S+SASEWREVTVRSSTEILFQPQNSTK RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTU6 NERD domain-containing protein

1.5e-82

87.03

Show/hide

Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFPSEVITYDQWMQLKP H S SGWMKGAFRGKKE QEEPLDQ+LKAILGTAPMWDKLELKGKYILGDFLEF+GKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        + LRDIKRSKISH+TIQKTSMLGFAPTRLQVLYAPRDYRSG S+SASEWREVTVRSSTEILFQPQNSTK RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

A0A1S3CA35 uncharacterized protein LOC103498367

1.2e-82

87.03

Show/hide

Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFPSEVITYDQWMQLKP H S SGWMKGAFRGKKELQEEPLDQ+LKAILGTAPMWDKLELKGKYILGDFLEF+GKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        + LRDIKRSKISH+TIQKTSMLGFAPTRLQVLYAPRDYRSG S+S+SEWREVTVRSSTEILFQPQNSTK RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

A0A5A7SRC0 Plasma membrane isoform 1

1.2e-82

87.03

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Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFPSEVITYDQWMQLKP H S SGWMKGAFRGKKELQEEPLDQ+LKAILGTAPMWDKLELKGKYILGDFLEF+GKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        + LRDIKRSKISH+TIQKTSMLGFAPTRLQVLYAPRDYRSG S+S+SEWREVTVRSSTEILFQPQNSTK RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

A0A6J1FS11 uncharacterized protein LOC111448288

2.1e-79

83.24

Show/hide

Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFP EV TYDQWMQLKP H S SGWMKGAFRGKKELQ+EPLDQ+LKAILGTAPMWDKLELKGKYILG+FLEFKGKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        +DLRDIKRSKISH+TIQKTSMLGFAPTRLQVLY PRDYRSG  +  SEW+EVTVRSSTEILFQPQNS+K RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

A0A6J1J7Y0 uncharacterized protein LOC111484272

2.1e-79

83.24

Show/hide

Query:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV
        + SCK  L      + TIDSGLFP EV TYDQWMQLKP H S SGWMKGAFRGKKELQ+EPLDQ+LKAILGTAPMWDKLELKGKYILG+FLEFKGKEEDV
Subjt:  FSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDV

Query:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        +DLRDIKRSKISH+TIQKTSMLGFAPTRLQVLY PRDYRSG  +  SEW+EVTVRSSTEILFQPQNS+K RKFKLSSVISLTLSA
Subjt:  EDLRDIKRSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

1.1e-51

65.45

Show/hide

Query:  FPSEVITYDQWMQLKP-EHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELK-GKYILGDFLEFKGKEEDVEDLRDIKRSKISHVTIQKTS
        FPSEVITY+ W QLKP     ISGW+KGAF   KE+QE    Q+L  ILGTAP WD++ELK  K +LG+FLEFKGK+ED   LR+IKRSK+  V+IQKTS
Subjt:  FPSEVITYDQWMQLKP-EHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELK-GKYILGDFLEFKGKEEDVEDLRDIKRSKISHVTIQKTS

Query:  MLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA
        M G AP+RLQVLY+ RDYRS  SS A E +EVTVRSSTE+LFQP++STK +KFKLSS++S++LSA
Subjt:  MLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

Sequences

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CDS sequence

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ATGATAGAGTTTTCAAGTTGTAAGAAATTCCTAACAGCTGTTTTTTCCCCTTACAGCACGATTGACTCGGGATTATTTCCTTCTGAAGTTATTACCTACGACCAGTGGAT
GCAGCTGAAACCGGAACACGGTTCCATCTCTGGCTGGATGAAAGGTGCATTTCGTGGAAAGAAAGAATTGCAGGAAGAACCTCTAGATCAAAGGCTTAAAGCTATCCTTG
GCACTGCACCAATGTGGGATAAATTGGAGCTCAAAGGGAAATATATACTAGGAGACTTTCTGGAATTCAAGGGAAAGGAAGAAGATGTTGAAGATTTGAGAGATATCAAA
CGGTCAAAAATTAGTCATGTGACCATTCAAAAGACAAGCATGCTTGGATTTGCTCCTACAAGGCTTCAAGTTTTGTACGCTCCCCGTGATTATCGAAGTGGGAGCTCGTC
TTCAGCTTCAGAGTGGAGGGAAGTGACAGTAAGATCAAGCACAGAGATTTTATTTCAACCTCAGAACTCTACAAAAACTCGTAAGTTCAAACTCTCTTCAGTTATCTCCT
TGACTCTCAGTGCGTAG

mRNA sequence

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Protein sequence

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MIEFSSCKKFLTAVFSPYSTIDSGLFPSEVITYDQWMQLKPEHGSISGWMKGAFRGKKELQEEPLDQRLKAILGTAPMWDKLELKGKYILGDFLEFKGKEEDVEDLRDIK
RSKISHVTIQKTSMLGFAPTRLQVLYAPRDYRSGSSSSASEWREVTVRSSTEILFQPQNSTKTRKFKLSSVISLTLSA

Spg001098 (gene) of Sponge gourd (cylindrica) v1 genome