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Spg001113 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001113
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold8:37723012..37723930
RNA-Seq ExpressionSpg001113
SyntenySpg001113
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYR45114.1 hypothetical protein Ahy_A07g030979 isoform C [Arachis hypogaea]9.2e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

RYR67552.1 hypothetical protein Ahy_A03g013949 [Arachis hypogaea]9.2e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

XP_015954570.1 pentatricopeptide repeat-containing protein At4g21065 [Arachis duranensis]9.2e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

XP_020962458.1 pentatricopeptide repeat-containing protein At4g21065-like [Arachis ipaensis]9.2e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

XP_025688656.1 pentatricopeptide repeat-containing protein At4g21065 [Arachis hypogaea]9.2e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

TrEMBL top hitse value%identityAlignment
A0A1S2Y918 pentatricopeptide repeat-containing protein At4g21065-like5.8e-0646.67Show/hide
Query:  HHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFL
        HH EKLA+   L       + R+++   SCE+CH+FMKL+SK Y  +II++DR  FHHF+
Subjt:  HHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFL

A0A445C2F6 DYW_deaminase domain-containing protein4.5e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

A0A445DWJ2 DYW_deaminase domain-containing protein4.5e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

A0A6P4CPK8 pentatricopeptide repeat-containing protein At4g210654.5e-0650.85Show/hide
Query:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+        Q  + R+++   SCE+CH+FMKLVSK Y  EII++DR  FHHF
Subjt:  HHIEKLAVT-------QILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

A0A7N0T263 DYW_deaminase domain-containing protein5.8e-0647.46Show/hide
Query:  HHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+   +       + R+L+   SCE+CH FMKL+SK Y  +II++DR  FHHF
Subjt:  HHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

SwissProt top hitse value%identityAlignment
Q9FJY7 Pentatricopeptide repeat-containing protein At5g665204.3e-0639.39Show/hide
Query:  QSSSITSHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        +  +I   H EKLA+T  L         R+++    C++CHK  KL+SK Y  +I+M+DR  FHHF
Subjt:  QSSSITSHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic4.0e-0441.94Show/hide
Query:  HHIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+          T++   + LR    C  CH+  KL+SK Y  EII +DR  FHHF
Subjt:  HHIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

Q9LXE8 Pentatricopeptide repeat-containing protein At5g15340, mitochondrial1.4e-0445.9Show/hide
Query:  HIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        H EKLAV          T +L F+ LR    C +CH  MK+VSK Y  EII++DR  FH F
Subjt:  HIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

Q9LXY5 Pentatricopeptide repeat-containing protein At3g565502.4e-0439.68Show/hide
Query:  SITSHHIEKLAV-------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        S  + H EKLA+       T     R+ +    C +CH F K VSK +  EII++DR  FHHF
Subjt:  SITSHHIEKLAV-------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

Q9ZVF4 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial6.2e-0541.67Show/hide
Query:  SHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        SHH EKLA+   L         R+++   +C++CH F K VS    +EIIM+D+  FHHF
Subjt:  SHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-0541.94Show/hide
Query:  HHIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        HH EKLA+          T++   + LR    C  CH+  KL+SK Y  EII +DR  FHHF
Subjt:  HHIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

AT2G01510.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.4e-0641.67Show/hide
Query:  SHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        SHH EKLA+   L         R+++   +C++CH F K VS    +EIIM+D+  FHHF
Subjt:  SHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

AT3G56550.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-0539.68Show/hide
Query:  SITSHHIEKLAV-------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        S  + H EKLA+       T     R+ +    C +CH F K VSK +  EII++DR  FHHF
Subjt:  SITSHHIEKLAV-------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

AT5G15340.1 Pentatricopeptide repeat (PPR) superfamily protein9.8e-0645.9Show/hide
Query:  HIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        H EKLAV          T +L F+ LR    C +CH  MK+VSK Y  EII++DR  FH F
Subjt:  HIEKLAV----------TQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.1e-0739.39Show/hide
Query:  QSSSITSHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF
        +  +I   H EKLA+T  L         R+++    C++CHK  KL+SK Y  +I+M+DR  FHHF
Subjt:  QSSSITSHHIEKLAVTQIL-------RFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGTTCCTCAATTACAAGTCATCACATTGAAAAACTTGCTGTGACGCAAATTCTGAGATTCAGATTGTTGAGATTTGATGGGTCCTGCGAGGAATGCCACAAGTT
TATGAAACTGGTCTCGAAGACGTACCCAAGCGAGATCATAATGAAGGATAGATTCTGTTTCCACCATTTCCTACTTTCAGGAATGGTTACTACTCATCCAAGGACCACTG
GTAACAGGGAGATTGGTACTTGGTTGATTTTTTCCAGAGCAATACTAATGAGAACTGAGGAGCTTAAAACTGATGTCACAAAACTTTGTCCAAGTGATGAAAATGCTAAG
GACCAAGGTGGGTGGGACTATTCTTCTGTGAAGACACTC
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGTTCCTCAATTACAAGTCATCACATTGAAAAACTTGCTGTGACGCAAATTCTGAGATTCAGATTGTTGAGATTTGATGGGTCCTGCGAGGAATGCCACAAGTT
TATGAAACTGGTCTCGAAGACGTACCCAAGCGAGATCATAATGAAGGATAGATTCTGTTTCCACCATTTCCTACTTTCAGGAATGGTTACTACTCATCCAAGGACCACTG
GTAACAGGGAGATTGGTACTTGGTTGATTTTTTCCAGAGCAATACTAATGAGAACTGAGGAGCTTAAAACTGATGTCACAAAACTTTGTCCAAGTGATGAAAATGCTAAG
GACCAAGGTGGGTGGGACTATTCTTCTGTGAAGACACTC
Protein sequenceShow/hide protein sequence
MQSSSITSHHIEKLAVTQILRFRLLRFDGSCEECHKFMKLVSKTYPSEIIMKDRFCFHHFLLSGMVTTHPRTTGNREIGTWLIFSRAILMRTEELKTDVTKLCPSDENAK
DQGGWDYSSVKTL