CuGenDBv2

Gene ID	Spg001158
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 32
Genome location	scaffold8:37105270..37107381
RNA-Seq Expression	Spg001158
Synteny	Spg001158
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009631 - cold acclimation (biological process) GO:0010150 - leaf senescence (biological process) GO:0048364 - root development (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR033244 - Mediator of RNA polymerase II transcription subunit 32

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045925.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

2.0e-69

96.62

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Query:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS
        SDMD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPIS
Subjt:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        AVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

TYK13665.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

6.0e-69

95.95

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Query:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS
        SDMD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPIS
Subjt:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        AVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_004148855.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus]

5.0e-68

96.58

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Query:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ATT LPPISAV
Subjt:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_008457936.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]

8.6e-68

95.89

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Query:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

XP_038902813.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida]

7.8e-69

97.26

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Query:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTG+PPISAV
Subjt:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIN7 Uncharacterized protein

2.4e-68

96.58

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Query:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ATT LPPISAV
Subjt:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A1S3C6T6 mediator of RNA polymerase II transcription subunit 32

4.2e-68

95.89

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Query:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 32

9.9e-70

96.62

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Query:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS
        SDMD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPIS
Subjt:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        AVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 32

2.9e-69

95.95

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Query:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS
        SDMD+LVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPIS
Subjt:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        AVRLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

A0A6J1JEJ1 mediator of RNA polymerase II transcription subunit 32-like isoform X1

4.2e-68

95.36

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Query:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TTGLPP
        SDMD+LVDSLNNAYQEFV+GAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA  TTGLPP
Subjt:  SDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TTGLPP

Query:  ISAVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ
        ISA+RLEQMSKAVRWLVIELQHGSG AAASASAHSHPSAPFDARFTEDATQ
Subjt:  ISAVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ

SwissProt top hits

e value

%identity

Alignment

Q84VW5 Mediator of RNA polymerase II transcription subunit 32

1.9e-46

69.28

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Query:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----
        MDN+VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA TG    
Subjt:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.4e-47

69.28

Show/hide

Query:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----
        MDN+VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA TG    
Subjt:  MDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Sequences

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CDS sequence

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ATGCCTACCGGAACTGTTTTCAGTTCCTTTCTGAAGTATTCATATTCTGATATGGATAACCTAGTGGATTCTTTAAATAACGCATATCAGGAATTTGTTGCTGGAGCCGC
TAATGTACTTGAAGCAAATGAAACCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAACTATTCAGGGTTGCTTGTGATC
AAGCAGAGGAGTTTGTGGAGTCTGTGAAACAAAGGATAGGATCAGAGTGCCTGGTTGATGAGGCCACTGGTTCACTGGCCGGCAAGTCTGGGCAGGCCGCCACCACCGGT
CTTCCTCCGATCAGTGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCAGGAGCGGCTGCATCTGCTTCAGCACACTC
TCACCCTTCTGCTCCTTTTGATGCTAGATTTACCGAGGATGCAACCCAATAG

mRNA sequence

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Protein sequence

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MPTGTVFSSFLKYSYSDMDNLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTG
LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Spg001158 (gene) of Sponge gourd (cylindrica) v1 genome