; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001293 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001293
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:36970390..36975444
RNA-Seq ExpressionSpg001293
SyntenySpg001293
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274760.1 unnamed protein product [Prunus armeniaca]1.7e-1333.33Show/hide
Query:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL
        +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+GW+  DS G LLCAG +          +EL A+   L    
Subjt:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL

Query:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA
        + HL      II+E+DS + I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Subjt:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA

CAB4274761.1 unnamed protein product [Prunus armeniaca]1.7e-1333.33Show/hide
Query:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL
        +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+GW+  DS G LLCAG +          +EL A+   L    
Subjt:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL

Query:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA
        + HL      II+E+DS + I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Subjt:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA

CAB4303756.1 unnamed protein product [Prunus armeniaca]4.1e-1235.1Show/hide
Query:  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSE
        P    P +  +   W  PP G+ K+N DA+WS  +  GG+GW+  DS G LLCAG +          +EL A+   L    + HL      II+E+DS +
Subjt:  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSE

Query:  VISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACF
         I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A F
Subjt:  VISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.6e-1636.36Show/hide
Query:  ENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILN
        + L+++  W PPP+ +W +N+DASWS+   RGG+GWI     G ++ AG + +     +K LE  A+  GL+NL +  + RP   + IE DS+EV S+LN
Subjt:  ENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILN

Query:  HRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLA
         + +D+++   V +++ +L      + F+   RE+N  AHSLA
Subjt:  HRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLA

XP_024046691.1 uncharacterized protein LOC112101027 [Citrus clementina]5.4e-1232.43Show/hide
Query:  SPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISIL
        S ++ ++Q+ W  PP G +K+N DA+   +QQR G+G +  +S G ++ A  K       +   + EA+  GL+  ++   R FP +I+E+DS EV+ ++
Subjt:  SPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISIL

Query:  NHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAV
        N ++   +E + VA +V D    +  V    +PR  N  AHSLA  A+
Subjt:  NHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAV

TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224037.9e-1736.36Show/hide
Query:  ENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILN
        + L+++  W PPP+ +W +N+DASWS+   RGG+GWI     G ++ AG + +     +K LE  A+  GL+NL +  + RP   + IE DS+EV S+LN
Subjt:  ENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSEVISILN

Query:  HRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLA
         + +D+++   V +++ +L      + F+   RE+N  AHSLA
Subjt:  HRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLA

A0A6J5UE59 Reverse transcriptase domain-containing protein8.1e-1433.33Show/hide
Query:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL
        +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+GW+  DS G LLCAG +          +EL A+   L    
Subjt:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL

Query:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA
        + HL      II+E+DS + I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Subjt:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA

A0A6J5UF50 Uncharacterized protein8.1e-1433.33Show/hide
Query:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL
        +++ V+     K+ L    P    P +  +   W  P LG+ K+N DA+WS  +  GG+GW+  DS G LLCAG +          +EL A+   L    
Subjt:  IIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLL

Query:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA
        + HL      II+E+DS + I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A FA
Subjt:  S-HLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFA

A0A6J5VSP2 Uncharacterized protein5.8e-1234.44Show/hide
Query:  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSE
        P    P +  +   W  PP G+ K+NSDA+WS  +  GG+GW+  DS G LLCAG +          +EL A+   L    + HL      II+E+DS +
Subjt:  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSE

Query:  VISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACF
         I +LN R+   S+   +   +  L A +  V+F F+P   N   HS+A F
Subjt:  VISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACF

A0A6J5WPU6 Reverse transcriptase domain-containing protein2.0e-1235.1Show/hide
Query:  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSE
        P    P +  +   W  PP G+ K+N DA+WS  +  GG+GW+  DS G LLCAG +          +EL A+   L    + HL      II+E+DS +
Subjt:  PIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLS-HLERPFPRIIIEADSSE

Query:  VISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACF
         I +LN R+   S+   +   +  L A +  V+F F+PR  N  AHS+A F
Subjt:  VISILNHRSDDISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0429.35Show/hide
Query:  WSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKC-LELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILN
        W  P  G  K N D S+     +   GW+  DS GS L AG + I RK       E++A+ + +++  SH    + R+  E D+  +  ++N
Subjt:  WSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKC-LELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILN

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-1129.1Show/hide
Query:  DAKSIIRMVNSSYCE---KNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMA
        DA  ++R     + E   +  L G A       NLS Q  W  PP    K N+DA+W  +  R G+GWI  + +G +L  G + + R   +   ELEA+ 
Subjt:  DAKSIIRMVNSSYCE---KNHLIGGAPIRFSPENLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMA

Query:  VGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVA-KKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNF
             +L+     + RII E+D+  ++++LN  SDD       A + +  L     +V F F+PR  N  A  +A  +++ +  D   F
Subjt:  VGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVA-KKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNF

AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-1233.79Show/hide
Query:  NLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHR
        N SS   W PPP    K N+DA+W+ D +R G+GW+  +  G +   G + + +   +   ELEAM      +LS     +  +I E+DS  +I ILN+ 
Subjt:  NLSSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHR

Query:  SDDISEAWIVAK-KVADLAALVG---DVTFSFSPRESNVEAHSLA
             E W   K  + DL  L+    +V F F PRE N  A  +A
Subjt:  SDDISEAWIVAK-KVADLAALVG---DVTFSFSPRESNVEAHSLA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0525.32Show/hide
Query:  SSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSD
        S    WSPP     K N DAS  E     GLGWI  +S G+++  G  +   +   +  E   +   ++       +   ++I E D+  +  ++N +S 
Subjt:  SSQRPWSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSD

Query:  --------DISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALN
                D  ++WI + +          + FSF  RE N  A  LA  A+  N
Subjt:  --------DISEAWIVAKKVADLAALVGDVTFSFSPRESNVEAHSLACFAVALN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACGTACCTTCAAAGGACAAGGATGAAGCAAGGAAAGAGAAGAAGAAGCGAACTCATAGGAAATCTTCAAAGAAGTCAAAACCGCAAAAACAACTGGAGAAGCT
AAAGCAACAATATGAAACAAAAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAG
ATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCT
TGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCT
TCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTT
TTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTT
GCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAA
TTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTT
TTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACGTACCTTCAAAGGACAAGGATGAAGCAAGGAAAGAGAAGAAGAAGCGAACTCATAGGAAATCTTCAAAGAAGTCAAAACCGCAAAAACAACTGGAGAAGCT
AAAGCAACAATATGAAACAAAAGGAACAAAACTGAATCCGGGGAACATCTTTTCTGGCAATGCAAAAGCTCAAAAGAGGAATTCTATCAAGAGGGGAGCAGGCTTTCCAG
ATGCCAAAAGTATCATCAGAATGGTTAATAGCAGTTATTGTGAGAAAAATCACCTGATTGGCGGCGCTCCAATTCGCTTCAGCCCGGAGAACCTCTCGAGTCAGAGGCCT
TGGTCTCCCCCTCCCCTCGGCGTCTGGAAAATTAATTCTGATGCTTCGTGGTCGGAAGATCAACAGCGGGGTGGTCTCGGATGGATTGCCCATGACTCTACAGGTTCTCT
TCTCTGTGCTGGTTTCAAACAAATCAATAGAAAATGGCCAATCAAGTGTTTAGAGCTGGAAGCTATGGCGGTGGGTCTGAAGAACTTACTTTCTCATTTGGAGAGGCCTT
TTCCGAGGATTATAATCGAAGCGGACTCTTCCGAAGTGATTTCCATCCTCAATCATCGATCAGATGACATTTCCGAAGCTTGGATTGTGGCAAAGAAGGTTGCTGATCTT
GCTGCTTTGGTGGGCGACGTTACCTTCTCTTTCAGTCCGCGGGAATCAAATGTCGAAGCGCACTCGTTGGCGTGTTTTGCTGTTGCTCTGAATCTTTTGGATAGTTCTAA
TTTTTTGGCTTCTTCCATTTCGGAAGAAGGTGTTTTCTGTAAAGAGGTTCTACCTCATTTATTAAACTCTTCCTTTCCTGGGAAGAGTATTTGTTTGGCTGGTGGTGGTT
TTTAA
Protein sequenceShow/hide protein sequence
MENVPSKDKDEARKEKKKRTHRKSSKKSKPQKQLEKLKQQYETKGTKLNPGNIFSGNAKAQKRNSIKRGAGFPDAKSIIRMVNSSYCEKNHLIGGAPIRFSPENLSSQRP
WSPPPLGVWKINSDASWSEDQQRGGLGWIAHDSTGSLLCAGFKQINRKWPIKCLELEAMAVGLKNLLSHLERPFPRIIIEADSSEVISILNHRSDDISEAWIVAKKVADL
AALVGDVTFSFSPRESNVEAHSLACFAVALNLLDSSNFLASSISEEGVFCKEVLPHLLNSSFPGKSICLAGGGF