; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001314 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001314
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontransmembrane E3 ubiquitin-protein ligase 1-like
Genome locationscaffold8:41802945..41805529
RNA-Seq ExpressionSpg001314
SyntenySpg001314
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604786.1 Transmembrane E3 ubiquitin-protein ligase FLY2, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2259.17Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH
        +QGVVIFHDVI NEHDV GVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  ++L       +     +PIYEMEKH
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH

Query:  CNIEIAAQISHFSSAQNGIG
        CNIEIAAQISH SSAQNG G
Subjt:  CNIEIAAQISHFSSAQNGIG

XP_022948043.1 transmembrane E3 ubiquitin-protein ligase 1-like isoform X1 [Cucurbita moschata]1.2e-2257.48Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QGVVIFHDVI NEHDV GVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  +L V     L             +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQNGIG
        IYEMEKHCNIEIAAQISH SSAQNG G
Subjt:  IYEMEKHCNIEIAAQISHFSSAQNGIG

XP_022948044.1 transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Cucurbita moschata]2.8e-2259.17Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH
        +QGVVIFHDVI NEHDV GVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  ++L       +     +PIYEMEKH
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH

Query:  CNIEIAAQISHFSSAQNGIG
        CNIEIAAQISH SSAQNG G
Subjt:  CNIEIAAQISHFSSAQNGIG

XP_023533040.1 transmembrane E3 ubiquitin-protein ligase 1-like isoform X1 [Cucurbita pepo subsp. pepo]1.2e-2257.48Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QGVVIFHDVI NEHDV GVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  +L V     L             +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQNGIG
        IYEMEKHCNIEIAAQISH SSAQNG G
Subjt:  IYEMEKHCNIEIAAQISHFSSAQNGIG

XP_023533041.1 transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Cucurbita pepo subsp. pepo]2.8e-2259.17Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH
        +QGVVIFHDVI NEHDV GVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  ++L       +     +PIYEMEKH
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH

Query:  CNIEIAAQISHFSSAQNGIG
        CNIEIAAQISH SSAQNG G
Subjt:  CNIEIAAQISHFSSAQNGIG

TrEMBL top hitse value%identityAlignment
A0A0A0KGU2 RING-type domain-containing protein3.9e-2257.26Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QGVVIFHDVI NEHDVGGVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  +L V                   +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQN
        IYEMEKHCNIEIAAQISHFSS QN
Subjt:  IYEMEKHCNIEIAAQISHFSSAQN

A0A1S3BJA5 transmembrane E3 ubiquitin-protein ligase 1-like isoform X23.0e-2257.26Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QGVVIFHDVI NEH+VGGVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  +L V                   +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQN
        IYEMEKHCNIEIAAQISHFSSAQN
Subjt:  IYEMEKHCNIEIAAQISHFSSAQN

A0A5D3C0M1 Transmembrane E3 ubiquitin-protein ligase 1-like isoform X23.0e-2257.26Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QGVVIFHDVI NEH+VGGVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  +L V                   +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQN
        IYEMEKHCNIEIAAQISHFSSAQN
Subjt:  IYEMEKHCNIEIAAQISHFSSAQN

A0A6J1G8A1 transmembrane E3 ubiquitin-protein ligase 1-like isoform X16.0e-2357.48Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QGVVIFHDVI NEHDV GVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  +L V     L             +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQNGIG
        IYEMEKHCNIEIAAQISH SSAQNG G
Subjt:  IYEMEKHCNIEIAAQISHFSSAQNGIG

A0A6J1G8N8 transmembrane E3 ubiquitin-protein ligase 1-like isoform X21.3e-2259.17Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH
        +QGVVIFHDVI NEHDV GVQIKVEGVYIWPFRQLRMVANS               + GE      S+L  NP  ++L       +     +PIYEMEKH
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLI----AAPIYEMEKH

Query:  CNIEIAAQISHFSSAQNGIG
        CNIEIAAQISH SSAQNG G
Subjt:  CNIEIAAQISHFSSAQNGIG

SwissProt top hitse value%identityAlignment
Q500V2 Transmembrane E3 ubiquitin-protein ligase FLY26.0e-2048.39Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QG V+FHDV  NEH+VGG QIKVEGVYIWPFRQLR+VANS            +K   G E     S    NP  +L +                   +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQN
        IYEMEKHCNIEIAAQIS  +S++N
Subjt:  IYEMEKHCNIEIAAQISHFSSAQN

Q5PP23 Transmembrane E3 ubiquitin-protein ligase FLY15.1e-1949.12Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANS-LEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLIAAPIYEMEKHCNI
        +QGVV+FHDV  NE +VGG QI +EGVYIWPFRQLR+VANS  E    +   NL           +  +   +P   LL   LS     P+ EMEKHCNI
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANS-LEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLIAAPIYEMEKHCNI

Query:  EIAAQISHFSSAQN
        EIAAQ+S  +S++N
Subjt:  EIAAQISHFSSAQN

Arabidopsis top hitse value%identityAlignment
AT2G20650.1 RING/U-box superfamily protein4.3e-2148.39Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QG V+FHDV  NEH+VGG QIKVEGVYIWPFRQLR+VANS            +K   G E     S    NP  +L +                   +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQN
        IYEMEKHCNIEIAAQIS  +S++N
Subjt:  IYEMEKHCNIEIAAQISHFSSAQN

AT2G20650.2 RING/U-box superfamily protein4.3e-2148.39Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP
        +QG V+FHDV  NEH+VGG QIKVEGVYIWPFRQLR+VANS            +K   G E     S    NP  +L +                   +P
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFL-----------IAAP

Query:  IYEMEKHCNIEIAAQISHFSSAQN
        IYEMEKHCNIEIAAQIS  +S++N
Subjt:  IYEMEKHCNIEIAAQISHFSSAQN

AT4G28370.1 RING/U-box superfamily protein3.6e-2049.12Show/hide
Query:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANS-LEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLIAAPIYEMEKHCNI
        +QGVV+FHDV  NE +VGG QI +EGVYIWPFRQLR+VANS  E    +   NL           +  +   +P   LL   LS     P+ EMEKHCNI
Subjt:  MQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANS-LEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLIAAPIYEMEKHCNI

Query:  EIAAQISHFSSAQN
        EIAAQ+S  +S++N
Subjt:  EIAAQISHFSSAQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTAATTTGCTGATGCAGGGGGTTGTTATTTTTCATGATGTAATTAGTAACGAACATGATGTTGGTGGAGTTCAAATTAAGGTTGAGGGTGTATATATTTGGCC
TTTTAGACAGCTCCGGATGGTAGCTAACAGCTTGGAGTTTTCTCCTCCCAGGTGTTCCAAGAATCTCCGCAAGATAAGATGTGGAGAAGAAGCCACTGTAACTTTCTCGC
TCTTGGACTTTAACCCACTTTCAATTTTGTTGGTACTGATTTTATCTTTTCTTATTGCAGCACCAATTTATGAAATGGAGAAGCATTGCAATATTGAAATAGCAGCTCAA
ATATCACATTTCTCTTCTGCACAAAATGGTATTGGATGTTCTGCATATGAGTCTGCAATAGAGTATATCAATCATGTCTCTGTGAGCCTTAGGCTCATGGGCATAGTCCT
TTTGATGCTCAGCCATGTAAAGAATTTAATCAAAACAAAGCCTTATGGGCTATGGAGGATCTTGGAAGCTAAATCAGCACTTGAATGGATGTTCACTAAGTTAAGGAGAG
CATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTAATTTGCTGATGCAGGGGGTTGTTATTTTTCATGATGTAATTAGTAACGAACATGATGTTGGTGGAGTTCAAATTAAGGTTGAGGGTGTATATATTTGGCC
TTTTAGACAGCTCCGGATGGTAGCTAACAGCTTGGAGTTTTCTCCTCCCAGGTGTTCCAAGAATCTCCGCAAGATAAGATGTGGAGAAGAAGCCACTGTAACTTTCTCGC
TCTTGGACTTTAACCCACTTTCAATTTTGTTGGTACTGATTTTATCTTTTCTTATTGCAGCACCAATTTATGAAATGGAGAAGCATTGCAATATTGAAATAGCAGCTCAA
ATATCACATTTCTCTTCTGCACAAAATGGTATTGGATGTTCTGCATATGAGTCTGCAATAGAGTATATCAATCATGTCTCTGTGAGCCTTAGGCTCATGGGCATAGTCCT
TTTGATGCTCAGCCATGTAAAGAATTTAATCAAAACAAAGCCTTATGGGCTATGGAGGATCTTGGAAGCTAAATCAGCACTTGAATGGATGTTCACTAAGTTAAGGAGAG
CATAA
Protein sequenceShow/hide protein sequence
MSFNLLMQGVVIFHDVISNEHDVGGVQIKVEGVYIWPFRQLRMVANSLEFSPPRCSKNLRKIRCGEEATVTFSLLDFNPLSILLVLILSFLIAAPIYEMEKHCNIEIAAQ
ISHFSSAQNGIGCSAYESAIEYINHVSVSLRLMGIVLLMLSHVKNLIKTKPYGLWRILEAKSALEWMFTKLRRA