; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001324 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001324
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibosomal_L30 domain-containing protein
Genome locationscaffold8:40698126..40703534
RNA-Seq ExpressionSpg001324
SyntenySpg001324
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5193.75Show/hide
Query:  ILEILDMNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPL
        ILE+LDMNAFKAFKANVPIAWSPNLY+TLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQHK+LRPPL
Subjt:  ILEILDMNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPL

Query:  VVNHLPATSSAS
        VVNHLPA SS S
Subjt:  VVNHLPATSSAS

KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]1.7e-4794.34Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLY+TLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        + SSAS
Subjt:  ATSSAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]1.3e-4794.34Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLY+TLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        + SSAS
Subjt:  ATSSAS

XP_022947175.1 uncharacterized protein LOC111451121 [Cucurbita moschata]5.8e-4894.34Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLY+TLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        A SS S
Subjt:  ATSSAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]2.6e-4896.23Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLY+TLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        A SSAS
Subjt:  ATSSAS

TrEMBL top hitse value%identityAlignment
A0A1S3C214 50S ribosomal protein L301.8e-4791.51Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLY+TLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        A SSAS
Subjt:  ATSSAS

A0A5A7VAZ6 50S ribosomal protein L301.8e-4791.51Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLY+TLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        A SSAS
Subjt:  ATSSAS

A0A6J1FUA4 uncharacterized protein LOC1114488486.2e-4894.34Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLY+TLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        + SSAS
Subjt:  ATSSAS

A0A6J1G641 uncharacterized protein LOC1114511212.8e-4894.34Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLY+TLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        A SS S
Subjt:  ATSSAS

A0A6J1JDZ2 uncharacterized protein LOC1114841521.4e-4795.28Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLY+TLVRGIPGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQH AL+PPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  ATSSAS
        A SSAS
Subjt:  ATSSAS

SwissProt top hitse value%identityAlignment
A1KB09 50S ribosomal protein L304.1e-0450Show/hide
Query:  VTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        VTLV+ + GT++ HR T+  L LR+ N TV   +TP VRGM+ +V  LV VE
Subjt:  VTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

C3PL27 50S ribosomal protein L304.1e-0440.74Show/hide
Query:  LYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L +T V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q47J85 50S ribosomal protein L304.1e-0450Show/hide
Query:  VTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        VTLV+ + GT++ HR T++ L LRK N +    +TP VRGM+Q+V+ LV VE
Subjt:  VTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8FS51 50S ribosomal protein L303.1e-0446.3Show/hide
Query:  LYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L +T V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Q8NSX3 50S ribosomal protein L303.1e-0444.44Show/hide
Query:  LYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE
        L +T ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Subjt:  LYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein2.3e-3466.36Show/hide
Query:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNH-L
        M+ F+AFKA VPI WS +LY+TLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGM+ QVKR+VVVETEEMY ARK+    HKALRPPLVV+H  
Subjt:  MNAFKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNH-L

Query:  PATSSAS
        PAT S++
Subjt:  PATSSAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAGAAGGGAAAGTGTTTGGGAATGGTGAGTGTGAGAAGTGAGGAAGAGAAAGCGGTATGGTGCAGAGGGTTGGTGAAAGGATTCTGCCATTTGAAGCGGAAGGT
AGTTGCGGGAGAAGGAGACTCCATCCTATCAGTTCGGACTTTTGAGGCCATGGCCATTCTGAATTCTCCTCCTCCGTTTCAGCAGCTCAGTATCGCCGCCGCCGCATTTC
TTCCGCTCGTGCCGCTGCAGTCTCCCTACTGGCGGTTTTGCACTGATTTTTTACTCACTTGTTATTACTGCGTACACTTTCAAATTTTGGAGATCTTGGACATGAATGCC
TTCAAGGCCTTCAAAGCCAATGTTCCAATTGCATGGAGTCCTAATCTTTATGTCACATTAGTGAGAGGAATTCCAGGAACAAGGAGACTTCACAGACGTACTTTAGAGGC
ATTGCGTCTTCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGT
ATAAAGCCCGTAAACAGAAGGTGGAACAGCACAAGGCCCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGCTACAAGTTCTGCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGAGAAGGGAAAGTGTTTGGGAATGGTGAGTGTGAGAAGTGAGGAAGAGAAAGCGGTATGGTGCAGAGGGTTGGTGAAAGGATTCTGCCATTTGAAGCGGAAGGT
AGTTGCGGGAGAAGGAGACTCCATCCTATCAGTTCGGACTTTTGAGGCCATGGCCATTCTGAATTCTCCTCCTCCGTTTCAGCAGCTCAGTATCGCCGCCGCCGCATTTC
TTCCGCTCGTGCCGCTGCAGTCTCCCTACTGGCGGTTTTGCACTGATTTTTTACTCACTTGTTATTACTGCGTACACTTTCAAATTTTGGAGATCTTGGACATGAATGCC
TTCAAGGCCTTCAAAGCCAATGTTCCAATTGCATGGAGTCCTAATCTTTATGTCACATTAGTGAGAGGAATTCCAGGAACAAGGAGACTTCACAGACGTACTTTAGAGGC
ATTGCGTCTTCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGT
ATAAAGCCCGTAAACAGAAGGTGGAACAGCACAAGGCCCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGCTACAAGTTCTGCTTCTTGA
Protein sequenceShow/hide protein sequence
MIEKGKCLGMVSVRSEEEKAVWCRGLVKGFCHLKRKVVAGEGDSILSVRTFEAMAILNSPPPFQQLSIAAAAFLPLVPLQSPYWRFCTDFLLTCYYCVHFQILEILDMNA
FKAFKANVPIAWSPNLYVTLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPATSSAS