CuGenDBv2

Gene ID	Spg001377
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Nucleoporin NUP188-like protein
Genome location	scaffold8:38521579..38525325
RNA-Seq Expression	Spg001377
Synteny	Spg001377
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0015031 - protein transport (biological process) GO:0005643 - nuclear pore (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR044840 - Nucleoporin Nup188

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605000.1 Nucleoporin 188-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-56

81.69

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSA+LPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDS E+KIG+HTLSIQ ELK KALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILAER+TEHEN+A+NSPFQELLH+  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

XP_022947489.1 uncharacterized protein LOC111451342 [Cucurbita moschata]

1.5e-56

81.69

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSA+LPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQE+KIG+HTLSIQ ELK KALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILAER+ EHEN+A+NSPFQELLH+  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

XP_022970819.1 uncharacterized protein LOC111469682 [Cucurbita maxima]

7.5e-56

81.69

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSA+LPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQE+KIGSH LSIQ ELK KALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILAER+TEHEN+A+NS FQELLH+  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

XP_023533343.1 uncharacterized protein LOC111795266 [Cucurbita pepo subsp. pepo]

2.6e-56

81.69

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSA+LPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQ +KIG+HTLSIQ ELK KALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILAER+TEHEN+A+NSPFQELLH+  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

XP_038902764.1 uncharacterized protein LOC120089385 isoform X1 [Benincasa hispida]

9.8e-56

82.39

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Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MATSTSVDSSLWWDPF  LLTELENVSLSSA+LPPKLMKK+DDNHAWF+DTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELK KALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILA R+  H+NVA NS FQEL HM  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C7B7 uncharacterized protein LOC103497512

9.0e-55

80.28

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA+STSVDSSLWWDPF   LTELENVSLSS +LPP LMKK+DDNHAWF+ TVSLFKKPNEKSRVALDSQEVKIG+HTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILA R+ EHENV  NSPF+ELLHM  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

A0A5A7TWR3 Nucleoporin NUP188-like protein

9.0e-55

80.28

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA+STSVDSSLWWDPF   LTELENVSLSS +LPP LMKK+DDNHAWF+ TVSLFKKPNEKSRVALDSQEVKIG+HTLSIQPELKAKALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILA R+ EHENV  NSPF+ELLHM  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

A0A6J1CY20 uncharacterized protein LOC111015501 isoform X2

3.1e-55

80.99

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MATSTSVDSSLWWDPF LLLTELENVSLSSA+LPP+LMKKLDDN AWFLD+VSLFKKPNEKSRVALDS +VK+GSHTLSIQPELK KALK SSYL LDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILAER+TEHENV ++SPFQELLH+  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

A0A6J1G6Y8 uncharacterized protein LOC111451342

7.3e-57

81.69

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSA+LPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQE+KIG+HTLSIQ ELK KALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILAER+ EHEN+A+NSPFQELLH+  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

A0A6J1I6R8 uncharacterized protein LOC111469682

3.6e-56

81.69

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA STSVDSSLWWDPFCLLLTELENV LSSA+LPPKL+KKLDDN AWFLDTVSLFKKPNEKSR ALDSQE+KIGSH LSIQ ELK KALKLSSYLCLDEV
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC
        QSYILAER+TEHEN+A+NS FQELLH+  L   IE +    C
Subjt:  QSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38760.1 Protein of unknown function (DUF3414)

2.3e-34

38.52

Show/hide

Query:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV
        MA   SVDSSLWWDPF  LLT+LEN SLS   LP  + KKL++NHAWF+ T+S+FK P+EKS+ AL+S  VKI  H L I+P+LK KAL++SS+L LDE+
Subjt:  MATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYLCLDEV

Query:  QSYILAERSTEHENVANNSPFQEL----LHMRQLRVRIENKVFSCCF-------------DKNYKGRVIRVQEDHLRKRYALSAEEIV------------
        QSYIL ERS E E    +S  QEL    + M  L+  I+ +    C              + + K   +++  D L +R +   E+++            
Subjt:  QSYILAERSTEHENVANNSPFQEL----LHMRQLRVRIENKVFSCCF-------------DKNYKGRVIRVQEDHLRKRYALSAEEIV------------

Query:  -LVWISDS-IDDLLLAPATHKFFRKTDCN-NGFIWIQKISNKRG
          +W  ++ I+D L+       + ++ C+ NG  W +  S  +G
Subjt:  -LVWISDS-IDDLLLAPATHKFFRKTDCN-NGFIWIQKISNKRG

Sequences

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CDS sequence

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ATGACCACCGCCGCCGTTTCGATGGCGGCGCTGCAACGAATGGGGACTCTCTACATGCGAGGTACTCGAGCCATGGCGGACCTCGCGGTCGTCCACGTACCGGAAAGACG
TCGGAGAAGACGAGTCCACGTACCAGAAAGACGTCGGAGAAGACGACTCCGTATTCAACTTCCCCTCACCGTTTTCTCGGAGACTGTTTTCTATCAGTACCGCGAAAGCC
GAAAAAGCACTATTAGTTCCTCTCTTCTTGAGGCGCTCTGTGCCAATTGCTTAAGCCCTCTGAAAACCCAGAGGCGCGAAAAAGAGAGAATTACACAGCCATTTCTGTTT
TCCTTGCTAGGGTTCAGCTTCGAAGCTCTCACTGGGACTTCTCGCATGGCCACCTCCACTTCCGTCGACTCCTCTCTCTGGTGGGATCCTTTCTGTCTACTTCTAACCGA
GCTCGAAAATGTCTCCCTCTCTTCTGCAAAGCTTCCTCCGAAACTGATGAAAAAGTTGGATGACAACCATGCGTGGTTCTTGGATACTGTTTCACTCTTCAAGAAACCGA
ACGAGAAATCGAGGGTGGCTTTAGATTCTCAGGAAGTCAAGATAGGATCCCACACACTATCTATACAACCTGAACTAAAAGCTAAAGCTCTCAAGTTGAGCTCCTATCTG
TGTTTGGATGAGGTGCAATCATATATTCTGGCTGAAAGATCCACTGAGCACGAGAATGTAGCTAACAATTCCCCATTTCAGGAACTTCTTCACATGCGGCAACTTCGTGT
TAGGATAGAGAATAAAGTTTTCTCGTGTTGTTTTGACAAGAACTACAAAGGGAGGGTCATTAGAGTTCAAGAGGATCACCTTAGGAAAAGATATGCCCTCTCTGCGGAAG
AAATTGTGTTGGTTTGGATCTCGGACTCGATTGACGACCTCCTTCTCGCTCCCGCAACACACAAGTTCTTCAGGAAGACGGACTGTAACAATGGATTCATCTGGATTCAA
AAGATCTCGAACAAGCGAGGAAGTTTTCTAGAGATAACCAAAGTCGTGACTTCCGGAGGTAAGCACAACCTGGTCGTCCCGGCTGGAATCGAGTTTAAGGGGTGGGAAGC
TTTCTCAAACCTTCTTAAGGATTTTGTGAATGGGAAGGTTGATGAGGTAGCAGAAGTTAAGGAAAGACCAAAAGGAGATAGTAGAAGAAAATCCTATGTGGATGTAGTTA
AAGTTCCCTCCAAGAAGGAGATCAGAATCGAGCAAACCCCTTCCTCGTCTAATGGAGTGGGAGCCTCAGAGGAGTGGGAACCTCTATTTATGCCAAAAGCCTGCCGTGAA
GATGTGAGGAAAATTGATTGGGATAAAGTGGTTATCATTGCGAAGAGAGATTTTATGATGACTGGGGTAGAATTTTGGACGTTCTGCAGCAACATTTAA

mRNA sequence

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Protein sequence

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MTTAAVSMAALQRMGTLYMRGTRAMADLAVVHVPERRRRRRVHVPERRRRRRLRIQLPLTVFSETVFYQYRESRKSTISSSLLEALCANCLSPLKTQRREKERITQPFLF
SLLGFSFEALTGTSRMATSTSVDSSLWWDPFCLLLTELENVSLSSAKLPPKLMKKLDDNHAWFLDTVSLFKKPNEKSRVALDSQEVKIGSHTLSIQPELKAKALKLSSYL
CLDEVQSYILAERSTEHENVANNSPFQELLHMRQLRVRIENKVFSCCFDKNYKGRVIRVQEDHLRKRYALSAEEIVLVWISDSIDDLLLAPATHKFFRKTDCNNGFIWIQ
KISNKRGSFLEITKVVTSGGKHNLVVPAGIEFKGWEAFSNLLKDFVNGKVDEVAEVKERPKGDSRRKSYVDVVKVPSKKEIRIEQTPSSSNGVGASEEWEPLFMPKACRE
DVRKIDWDKVVIIAKRDFMMTGVEFWTFCSNI

Spg001377 (gene) of Sponge gourd (cylindrica) v1 genome