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Spg001380 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001380
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold8:37724128..37724708
RNA-Seq ExpressionSpg001380
SyntenySpg001380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV61543.1 PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein/DYW_deaminase domain-containing protein [Cephalotus follicularis]3.4e-1460.32Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  AG+L++ EE VRKM +EPD V+WR L WA KVHGD  RG  L+KHLELL  + +DCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

KAF8013530.1 hypothetical protein BT93_I1389 [Corymbia citriodora subsp. variegata]1.4e-1560.32Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        ++  AG L E EEF+RKM +EPD V+WRNL WA  VHGD+ RG+ L+KHL+L++ NA DCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

XP_030450119.1 pentatricopeptide repeat-containing protein At4g21065-like [Syzygium oleosum]1.5e-1458.73Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        ++  AG L+E EEF+RKM +EPD V+WR L WA  VHGD+ RG+ L+KHL+L   NA DCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

XP_030523087.1 pentatricopeptide repeat-containing protein At4g21065-like [Rhodamnia argentea]1.1e-1560.32Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        ++  AG L+E EEF+RKM +EPD  +WRNL WA KVHGD+ RG+ L+KHL+L   NA DCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

XP_038705804.1 pentatricopeptide repeat-containing protein At4g21065-like [Tripterygium wilfordii]2.6e-1460.32Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  AG LKE E+F+RKM ++PD VLWRNL W+ KVHGD  RG+ L+K  ELL    SDCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

TrEMBL top hitse value%identityAlignment
A0A1J6IUF2 Pentatricopeptide repeat-containing protein2.4e-1359.32Show/hide
Query:  AGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        AG L+E E+F+RKM ++PD VLWR L W  K+HGDV R + LVK +ELLN ++ DCGSY
Subjt:  AGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

A0A1Q3B151 PPR domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein/DYW_deaminase domain-containing protein1.6e-1460.32Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  AG+L++ EE VRKM +EPD V+WR L WA KVHGD  RG  L+KHLELL  + +DCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

A0A438JTW5 Pentatricopeptide repeat-containing protein2.4e-1358.73Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+   G+L E EEF+RKM +EPD VLWR L WASKVHGD+ R + L+K   LL  +A DCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

A0A5J5BWN3 DYW_deaminase domain-containing protein8.1e-1457.14Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  AG L++ E+F+RKM +EPD VLWR L WA K+HGD  RG+ L+K LEL N +++DCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

A0A7J7DH83 DYW_deaminase domain-containing protein1.3e-1460.32Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  AG LKE E+F+RKM ++PD VLWRNL W+ KVHGD  RG+ L+K  ELL    SDCGSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

SwissProt top hitse value%identityAlignment
Q9CA56 Pentatricopeptide repeat-containing protein At1g74600, chloroplastic2.3e-0537.29Show/hide
Query:  AGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        +G L+E E F+  M ++PD ++W  L  A K+HG+V  GK   K  + +    SD G+Y
Subjt:  AGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

Q9SHZ8 Pentatricopeptide repeat-containing protein At2g220701.2e-0638.64Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELL---NKNA--------SDCGSYGWEVAMIIKAKVKD
        L   AG L+E +EF+ KM +EPD V W +L  A +VH ++  GK   + L LL   N  A        S CG   WE A  I+  +KD
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELL---NKNA--------SDCGSYGWEVAMIIKAKVKD

Q9SIT7 Pentatricopeptide repeat-containing protein At2g136002.3e-0534.92Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  AG+L+E +  + +M ++PD+V+W +L  A KVH +++ GK++ +  +LL    S+ G Y
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

Q9SN85 Pentatricopeptide repeat-containing protein At3g475301.3e-0534.57Show/hide
Query:  HKGVVKDELGSKSNVRTALIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        H G V D LG     R  L++ A  L      ++ M+++PD+ +WR L  A +VHGDV  G+ ++ H  L+   A + G Y
Subjt:  HKGVVKDELGSKSNVRTALIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

Q9ZVF4 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial5.1e-0541.27Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  +G L+E  EF++KM VEPD  +W  L  A  VH D+  G+   K  ++L + A D GSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

Arabidopsis top hitse value%identityAlignment
AT1G74600.1 pentatricopeptide (PPR) repeat-containing protein1.6e-0637.29Show/hide
Query:  AGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        +G L+E E F+  M ++PD ++W  L  A K+HG+V  GK   K  + +    SD G+Y
Subjt:  AGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

AT2G01510.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.6e-0641.27Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  +G L+E  EF++KM VEPD  +W  L  A  VH D+  G+   K  ++L + A D GSY
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein1.6e-0634.92Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        L+  AG+L+E +  + +M ++PD+V+W +L  A KVH +++ GK++ +  +LL    S+ G Y
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY

AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein8.6e-0838.64Show/hide
Query:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELL---NKNA--------SDCGSYGWEVAMIIKAKVKD
        L   AG L+E +EF+ KM +EPD V W +L  A +VH ++  GK   + L LL   N  A        S CG   WE A  I+  +KD
Subjt:  LIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELL---NKNA--------SDCGSYGWEVAMIIKAKVKD

AT3G47530.1 Pentatricopeptide repeat (PPR) superfamily protein9.5e-0734.57Show/hide
Query:  HKGVVKDELGSKSNVRTALIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY
        H G V D LG     R  L++ A  L      ++ M+++PD+ +WR L  A +VHGDV  G+ ++ H  L+   A + G Y
Subjt:  HKGVVKDELGSKSNVRTALIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGAAGGAGAGTGCATAAGGGTGTTGTGAAGGATGAGCTCGGTTCAAAGTCTAATGTGAGAACTGCGCTCATTGAAATGGCAGGGTATTTGAAAGAAACTGAGGA
GTTTGTAAGAAAGATGCAAGTTGAACCCGACAATGTGCTATGGAGAAATTTGACATGGGCGTCTAAAGTACATGGAGATGTCAGTCGAGGCAAGCATTTGGTAAAACACC
TTGAGCTTCTTAATAAGAATGCAAGTGATTGTGGGAGCTATGGTTGGGAAGTGGCAATGATAATTAAGGCAAAGGTAAAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGGAAGGAGAGTGCATAAGGGTGTTGTGAAGGATGAGCTCGGTTCAAAGTCTAATGTGAGAACTGCGCTCATTGAAATGGCAGGGTATTTGAAAGAAACTGAGGA
GTTTGTAAGAAAGATGCAAGTTGAACCCGACAATGTGCTATGGAGAAATTTGACATGGGCGTCTAAAGTACATGGAGATGTCAGTCGAGGCAAGCATTTGGTAAAACACC
TTGAGCTTCTTAATAAGAATGCAAGTGATTGTGGGAGCTATGGTTGGGAAGTGGCAATGATAATTAAGGCAAAGGTAAAGGATTAA
Protein sequenceShow/hide protein sequence
MMGRRVHKGVVKDELGSKSNVRTALIEMAGYLKETEEFVRKMQVEPDNVLWRNLTWASKVHGDVSRGKHLVKHLELLNKNASDCGSYGWEVAMIIKAKVKD