; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001391 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001391
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNusB domain-containing protein
Genome locationscaffold8:44999942..45005009
RNA-Seq ExpressionSpg001391
SyntenySpg001391
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0031564 - transcription antitermination (biological process)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR006027 - NusB/RsmB/TIM44
IPR011605 - NusB antitermination factor
IPR035926 - NusB-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605513.1 hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia]1.8e-14387.46Show/hide
Query:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LP+RLD VIATRPNFHFS  +SGICRFPF TSAIVPYVK+SVP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWD+HVLKI+KVIP TWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEV
        + V
Subjt:  QEV

XP_022948088.1 uncharacterized protein LOC111451776 [Cucurbita moschata]2.2e-14487.79Show/hide
Query:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LP+RLD VIATRPNFHFS  +SGICRFPF TSAIVPYVK+SVPH CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWD+HVLKI+KVIP TWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEV
        + V
Subjt:  QEV

XP_023007062.1 uncharacterized protein LOC111499665 [Cucurbita maxima]2.4e-14387.46Show/hide
Query:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LP+RLD VIATRPNFHFS H+SGIC FPF TSAIVPYVK+SVP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWD+HVLKI+KVIP TWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEV
        + V
Subjt:  QEV

XP_023532267.1 uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]2.4e-14387.13Show/hide
Query:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LP+RLD VIATRPNFHFS H+SGICRFPF TSAIVPYVK+SVP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAE+LAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWD+HVLKI+KVIP TWKDKPAGRILEL ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEV
        + V
Subjt:  QEV

XP_038901769.1 uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]1.8e-13888.42Show/hide
Query:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL
        D+VI TRPNFHFS HISGICRFPFR S+IVP+VKDS+ H CPQASL ASTSF EN VA++ +S+ VSS  TIPKVDKSG+FCSPRAARELALSIVYAACL
Subjt:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL

Query:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK
        EGSDP+RLFEKRLN RRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDS IEAEILAAPPKMVYSKLILRFTRKLLVAVVD WD+ VLK
Subjt:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK

Query:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV
        IEKVIPPTWKDKPA RILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI EIDS+HAREKQEV
Subjt:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV

TrEMBL top hitse value%identityAlignment
A0A0A0KWZ5 NusB domain-containing protein3.7e-13486.17Show/hide
Query:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL
        D+VI TRPNFHFSYHISGIC+FPF  S+IVP++KDS+P FC QASL ASTSFSEN VA+E +S+ +SS   IPKVDKSG+FCSPRAARELALSIVYAACL
Subjt:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL

Query:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK
        EGSDP+RLFEKRLNARRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAV D WD+  LK
Subjt:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK

Query:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        IEKVIPPTWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI EIDS  AREK
Subjt:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X12.6e-13586.32Show/hide
Query:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL
        D+VI TRPNFHFS HISGIC+FPF  S+IVP+VK+S+P  C QASL ASTSF EN VA+E +S+ VSS  TIPK+DKSG+FCSPRAARELALSIVYAACL
Subjt:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL

Query:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK
        EGSDP+RLFEKRLN+RRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPKMVYSKLILRFTRKLLVAVVD WDN  LK
Subjt:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK

Query:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV
        IEKVIPPTWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DST AREKQEV
Subjt:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV

A0A5D3DDJ4 NusB/RsmB/TIM442.6e-13586.32Show/hide
Query:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL
        D+VI TRPNFHFS HISGIC+FPF  S+IVP+VK+S+P  C QASL ASTSF EN VA+E +S+ VSS  TIPK+DKSG+FCSPRAARELALSIVYAACL
Subjt:  DRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFCSPRAARELALSIVYAACL

Query:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK
        EGSDP+RLFEKRLN+RRE GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPKMVYSKLILRFTRKLLVAVVD WDN  LK
Subjt:  EGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLK

Query:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV
        IEKVIPPTWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DST AREKQEV
Subjt:  IEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEV

A0A6J1G8E0 uncharacterized protein LOC1114517761.1e-14487.79Show/hide
Query:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LP+RLD VIATRPNFHFS  +SGICRFPF TSAIVPYVK+SVPH CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWD+HVLKI+KVIP TWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEV
        + V
Subjt:  QEV

A0A6J1KXJ4 uncharacterized protein LOC1114996651.2e-14387.46Show/hide
Query:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC
        MVELVS    +V+LP+RLD VIATRPNFHFS H+SGIC FPF TSAIVPYVK+SVP  CPQASL ASTSFS+NSV KE +SVLVSS   IPK+DKSGRFC
Subjt:  MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSS--TIPKVDKSGRFC

Query:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF
        SPRAARELALSI+YA+CLEGSDP+RLFEKRLNAR EPGYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDSAIEAEILAAPPK+VYSKLILRF
Subjt:  SPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRF

Query:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK
        TRKLLVAVVDRWD+HVLKI+KVIP TWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI E DSTHAR K
Subjt:  TRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREK

Query:  QEV
        + V
Subjt:  QEV

SwissProt top hitse value%identityAlignment
A7GWZ7 Transcription antitermination protein NusB1.4e-0538.81Show/hide
Query:  KIEKVIPPTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
        ++++++ P  K+K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP+ ING L
Subjt:  KIEKVIPPTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL

B1WXY6 Transcription antitermination protein NusB1.2e-0434.12Show/hide
Query:  LVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        L+  ++R    + +  + +   W+ K   +I +  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   I
Subjt:  LVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Q18B61 Transcription antitermination protein NusB6.4e-0637.04Show/hide
Query:  DNHVLKIEKVIPPTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINE
        +NH  KI+++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P+ ING L + V +I +
Subjt:  DNHVLKIEKVIPPTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINE

Q5N1J7 Transcription antitermination protein NusB7.1e-0538.1Show/hide
Query:  RKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        RK    +V +  N+  +I++ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  RKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Q8GIR7 Transcription antitermination protein NusB7.1e-0538.1Show/hide
Query:  RKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        RK    +V +  N+  +I++ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  RKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Arabidopsis top hitse value%identityAlignment
AT4G26370.1 antitermination NusB domain-containing protein1.3e-9176.28Show/hide
Query:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPP
        +PK+DKSGR  SPRAARELAL I+YAACLEGSDPIRLFEKR+NARREPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S IEAE+L+APP
Subjt:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPP

Query:  KMVYSKLILRFTRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        K+VYSKL+LRF +KLL AVVD+WD+HV+ IEK+ PP WK  PAGRILE  ILHLAMSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD 
Subjt:  KMVYSKLILRFTRKLLVAVVDRWDNHVLKIEKVIPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Query:  NEIDSTHARE-KQEV
            +  A E KQEV
Subjt:  NEIDSTHARE-KQEV

AT4G26370.2 antitermination NusB domain-containing protein3.8e-3877.08Show/hide
Query:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEIL
        +PK+DKSGR  SPRAARELAL I+YAACLEGSDPIRLFEKR+NARREPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S I   ++
Subjt:  IPKVDKSGRFCSPRAARELALSIVYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAACTTGTATCGACGCCATTGCACCTGGTTCTTTTGCCGTCGAGACTCGATAGAGTTATTGCCACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAAT
ATGCCGGTTCCCATTCCGCACTAGTGCAATCGTTCCCTATGTAAAAGATTCCGTGCCACACTTCTGCCCTCAAGCCTCACTTCACGCTTCTACTTCTTTTTCCGAAAATT
CTGTGGCCAAAGAGGGCAATTCTGTTTTAGTTTCTTCCACGATACCAAAGGTCGACAAGAGCGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATT
GTTTATGCAGCTTGTTTAGAAGGCTCTGATCCAATTCGTCTCTTCGAGAAGCGGTTGAATGCCCGTCGAGAACCGGGATACGAATTTGACAAGACATCATTGATGGAATA
TAATCATATGAGCTTTGGAGGCCCGCCAGTTACTGTGGAAACAACTGAAGAAGCAGATGAGCTTTTACGTAAGGATGAAAAGGATTCTGCAATTGAGGCAGAAATCCTTG
CAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAATCACGTGCTTAAAATTGAAAAAGTC
ATTCCTCCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTCGAACTCTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTCGTCGGAACAAGGCATCAAATTGTCAT
TAACGAGGCGGTTGATCTTGCAAAACGATTCTGTGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCAATGAAATTGATTCAACTC
ATGCTCGAGAGAAGCAAGAAGTTGATTTTGAACTTTTGGAGTGCCAGAGGACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAACTTGTATCGACGCCATTGCACCTGGTTCTTTTGCCGTCGAGACTCGATAGAGTTATTGCCACCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAAT
ATGCCGGTTCCCATTCCGCACTAGTGCAATCGTTCCCTATGTAAAAGATTCCGTGCCACACTTCTGCCCTCAAGCCTCACTTCACGCTTCTACTTCTTTTTCCGAAAATT
CTGTGGCCAAAGAGGGCAATTCTGTTTTAGTTTCTTCCACGATACCAAAGGTCGACAAGAGCGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATT
GTTTATGCAGCTTGTTTAGAAGGCTCTGATCCAATTCGTCTCTTCGAGAAGCGGTTGAATGCCCGTCGAGAACCGGGATACGAATTTGACAAGACATCATTGATGGAATA
TAATCATATGAGCTTTGGAGGCCCGCCAGTTACTGTGGAAACAACTGAAGAAGCAGATGAGCTTTTACGTAAGGATGAAAAGGATTCTGCAATTGAGGCAGAAATCCTTG
CAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAATCACGTGCTTAAAATTGAAAAAGTC
ATTCCTCCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTCGAACTCTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTCGTCGGAACAAGGCATCAAATTGTCAT
TAACGAGGCGGTTGATCTTGCAAAACGATTCTGTGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCAATGAAATTGATTCAACTC
ATGCTCGAGAGAAGCAAGAAGTTGATTTTGAACTTTTGGAGTGCCAGAGGACTTTGTAA
Protein sequenceShow/hide protein sequence
MVELVSTPLHLVLLPSRLDRVIATRPNFHFSYHISGICRFPFRTSAIVPYVKDSVPHFCPQASLHASTSFSENSVAKEGNSVLVSSTIPKVDKSGRFCSPRAARELALSI
VYAACLEGSDPIRLFEKRLNARREPGYEFDKTSLMEYNHMSFGGPPVTVETTEEADELLRKDEKDSAIEAEILAAPPKMVYSKLILRFTRKLLVAVVDRWDNHVLKIEKV
IPPTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDINEIDSTHAREKQEVDFELLECQRTL