; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001395 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001395
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:43309200..43310125
RNA-Seq ExpressionSpg001395
SyntenySpg001395
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RWR92932.1 hypothetical protein CKAN_02215900 [Cinnamomum micranthum f. kanehirae]8.5e-2438.02Show/hide
Query:  PLKELFPSIFQLSGSKASKVSELW---NGCT-WDLKFRRGIFYRELPDWMGLLSILSQVNLID-SEDSFAWSLEGNGVFSIKSALSALHKKRRILDEAIC
        PL E+FP +F+L  +K S VSE +   +GCT WD+ FRR +   E   +  LLS+LS V L   S+D   W    +G FS+K+  SAL         A  
Subjt:  PLKELFPSIFQLSGSKASKVSELW---NGCT-WDLKFRRGIFYRELPDWMGLLSILSQVNLID-SEDSFAWSLEGNGVFSIKSALSALHKKRRILDEAIC

Query:  GQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKFC----KPNSAVSW
          +W G  P RV+ F W      I+T D ++ R  +     + CVMC K  ES +HL +HCEF   VW HF G   + +C      N A SW
Subjt:  GQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKFC----KPNSAVSW

VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]3.8e-2434Show/hide
Query:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF
        R+ VG G+K+       L +  LK+LFP +  LS  K   ++   N       WD  FRR +   E+ + + LL IL  V L  S  D  +W +E  G F
Subjt:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF

Query:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF
        S KS  S L    R +       IW+  TP +++FF+W      INT D +Q R P + +SP+ CV+C +N E+  HL +HC ++ K+W    GA  +++
Subjt:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF

XP_034223760.1 THO complex subunit 1 isoform X1 [Prunus dulcis]1.4e-2333.82Show/hide
Query:  RRYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDS-EDSFAWSLEGNGV
        +R+ VG G+K+       L +  LK+LFP +  LS  K   ++   N       WD  FRR +   E+ + + LL IL +V L  S  D  +W +E  G 
Subjt:  RRYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDS-EDSFAWSLEGNGV

Query:  FSIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMK
        FS KS  S L    R +       IW+  TP +++FF+W      INT D +Q R P + +SP+ CV+C +N E+  HL +HC ++ K+W    GA   +
Subjt:  FSIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMK

Query:  FCKP
        +  P
Subjt:  FCKP

XP_034223762.1 THO complex subunit 1 isoform X3 [Prunus dulcis]1.4e-2333.82Show/hide
Query:  RRYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDS-EDSFAWSLEGNGV
        +R+ VG G+K+       L +  LK+LFP +  LS  K   ++   N       WD  FRR +   E+ + + LL IL +V L  S  D  +W +E  G 
Subjt:  RRYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDS-EDSFAWSLEGNGV

Query:  FSIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMK
        FS KS  S L    R +       IW+  TP +++FF+W      INT D +Q R P + +SP+ CV+C +N E+  HL +HC ++ K+W    GA   +
Subjt:  FSIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMK

Query:  FCKP
        +  P
Subjt:  FCKP

XP_034223765.1 THO complex subunit 1 isoform X5 [Prunus dulcis]1.4e-2333.82Show/hide
Query:  RRYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDS-EDSFAWSLEGNGV
        +R+ VG G+K+       L +  LK+LFP +  LS  K   ++   N       WD  FRR +   E+ + + LL IL +V L  S  D  +W +E  G 
Subjt:  RRYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDS-EDSFAWSLEGNGV

Query:  FSIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMK
        FS KS  S L    R +       IW+  TP +++FF+W      INT D +Q R P + +SP+ CV+C +N E+  HL +HC ++ K+W    GA   +
Subjt:  FSIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMK

Query:  FCKP
        +  P
Subjt:  FCKP

TrEMBL top hitse value%identityAlignment
A0A3S3R1F6 Uncharacterized protein4.1e-2438.02Show/hide
Query:  PLKELFPSIFQLSGSKASKVSELW---NGCT-WDLKFRRGIFYRELPDWMGLLSILSQVNLID-SEDSFAWSLEGNGVFSIKSALSALHKKRRILDEAIC
        PL E+FP +F+L  +K S VSE +   +GCT WD+ FRR +   E   +  LLS+LS V L   S+D   W    +G FS+K+  SAL         A  
Subjt:  PLKELFPSIFQLSGSKASKVSELW---NGCT-WDLKFRRGIFYRELPDWMGLLSILSQVNLID-SEDSFAWSLEGNGVFSIKSALSALHKKRRILDEAIC

Query:  GQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKFC----KPNSAVSW
          +W G  P RV+ F W      I+T D ++ R  +     + CVMC K  ES +HL +HCEF   VW HF G   + +C      N A SW
Subjt:  GQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKFC----KPNSAVSW

A0A5E4FU33 zf-RVT domain-containing protein (Fragment)1.8e-2434Show/hide
Query:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF
        R+ VG G+K+       L +  LK+LFP +  LS  K   ++   N       WD  FRR +   E+ + + LL IL  V L  S  D  +W +E  G F
Subjt:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF

Query:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF
        S KS  S L    R +       IW+  TP +++FF+W      INT D +Q R P + +SP+ CV+C +N E+  HL +HC ++ K+W    GA  +++
Subjt:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF

A0A803P465 Uncharacterized protein4.0e-2734.6Show/hide
Query:  YKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSEL---------WNGCTWDLKFRRGIFYRELPDWMGLLSILSQVNLID-SEDSFAWSLEG
        +K+GRGD++       + D PL   FP +  +S  + + + EL         W   +W+ KFRR +  RELP  + L+  +  V ++  SEDS  W  + 
Subjt:  YKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSEL---------WNGCTWDLKFRRGIFYRELPDWMGLLSILSQVNLID-SEDSFAWSLEG

Query:  NGVFSIKSALSAL--HKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFG
        +GVFS KSA S +  +   R+LD      +W+   P +VK F W L L  +N  DKVQ R P L +SP  CV C  + ES  HL + C+F  ++W +  G
Subjt:  NGVFSIKSALSAL--HKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFG

Query:  AFSMKFCKPNS
         F + +  P S
Subjt:  AFSMKFCKPNS

M5VH03 zf-RVT domain-containing protein (Fragment)1.8e-2433.99Show/hide
Query:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF
        R+ VG G+K+       L +  LK+LFP +  LS  K   ++   N       WD  FRR +   E+ + + LL IL  V L  S  D  +W +E  G F
Subjt:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF

Query:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF
        S KS  S L    R +       IW+  TP +++FF+W      INT D +Q R P + +SP+ CV+C +N E+  HL +HC ++ K+W    GA  +++
Subjt:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF

Query:  CKP
          P
Subjt:  CKP

M5VS59 Reverse transcriptase domain-containing protein (Fragment)5.4e-2433.5Show/hide
Query:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF
        R+ VG G+K+       L +  LK+LFP +  LS  K   ++   N       WD  FRR +   E+ + + LL IL  V L  S  D  +W +E  G F
Subjt:  RYKVGRGDKV-------LSDRPLKELFPSIFQLSGSKASKVSELWNG----CTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSE-DSFAWSLEGNGVF

Query:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF
        S KS  S L    R +       IW+  TP +++FF+W      INT D +Q R P +++SP+ CV+C +N E+  HL +HC ++ ++W    GA  +++
Subjt:  SIKSALSALHKKRRILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTTCTACAAGAGCGATAGGAGATACAAGGTTGGCAGGGGCGATAAGGTGCTCTCTGATCGTCCCTTAAAAGAGTTGTTCCCCTCTATATTCCAGCTCTCTGG
GTCCAAAGCTTCTAAAGTCAGCGAATTGTGGAATGGATGTACTTGGGACTTGAAATTTAGAAGAGGCATTTTTTATAGGGAATTGCCTGATTGGATGGGGTTGTTGTCTA
TCCTATCTCAAGTGAATTTGATCGATAGTGAAGACTCGTTTGCCTGGTCTCTTGAGGGCAACGGTGTTTTTTCTATAAAATCTGCCCTTTCGGCCTTGCACAAGAAAAGA
AGGATTCTGGATGAAGCCATCTGCGGTCAGATTTGGGAAGGTACAACTCCTAAAAGGGTGAAGTTTTTCTTGTGGACTCTAGGCCTTCTCAGCATTAATACTATGGATAA
GGTTCAGAGCAGATATCCTAGTCTCCAAGTTAGCCCCAACGTCTGTGTGATGTGCATGAAAAACGAAGAATCAGCTTCCCACCTCCTGGTTCATTGCGAGTTTGCTGAGA
AGGTGTGGAACCATTTTTTTGGGGCTTTCAGCATGAAGTTTTGCAAGCCCAACAGTGCGGTTAGCTGGTTCCATGATCAACCTTCATTGGAAGGCATTTTTGTAGTTTCC
TTTTGGAGGAGGGATGCCTTATCCCTTCGTCCTTTGGTTGTGGCTCTTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCTTCTACAAGAGCGATAGGAGATACAAGGTTGGCAGGGGCGATAAGGTGCTCTCTGATCGTCCCTTAAAAGAGTTGTTCCCCTCTATATTCCAGCTCTCTGG
GTCCAAAGCTTCTAAAGTCAGCGAATTGTGGAATGGATGTACTTGGGACTTGAAATTTAGAAGAGGCATTTTTTATAGGGAATTGCCTGATTGGATGGGGTTGTTGTCTA
TCCTATCTCAAGTGAATTTGATCGATAGTGAAGACTCGTTTGCCTGGTCTCTTGAGGGCAACGGTGTTTTTTCTATAAAATCTGCCCTTTCGGCCTTGCACAAGAAAAGA
AGGATTCTGGATGAAGCCATCTGCGGTCAGATTTGGGAAGGTACAACTCCTAAAAGGGTGAAGTTTTTCTTGTGGACTCTAGGCCTTCTCAGCATTAATACTATGGATAA
GGTTCAGAGCAGATATCCTAGTCTCCAAGTTAGCCCCAACGTCTGTGTGATGTGCATGAAAAACGAAGAATCAGCTTCCCACCTCCTGGTTCATTGCGAGTTTGCTGAGA
AGGTGTGGAACCATTTTTTTGGGGCTTTCAGCATGAAGTTTTGCAAGCCCAACAGTGCGGTTAGCTGGTTCCATGATCAACCTTCATTGGAAGGCATTTTTGTAGTTTCC
TTTTGGAGGAGGGATGCCTTATCCCTTCGTCCTTTGGTTGTGGCTCTTTTGTGA
Protein sequenceShow/hide protein sequence
MAAFYKSDRRYKVGRGDKVLSDRPLKELFPSIFQLSGSKASKVSELWNGCTWDLKFRRGIFYRELPDWMGLLSILSQVNLIDSEDSFAWSLEGNGVFSIKSALSALHKKR
RILDEAICGQIWEGTTPKRVKFFLWTLGLLSINTMDKVQSRYPSLQVSPNVCVMCMKNEESASHLLVHCEFAEKVWNHFFGAFSMKFCKPNSAVSWFHDQPSLEGIFVVS
FWRRDALSLRPLVVALL