CuGenDBv2

Gene ID	Spg001413
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Eukaryotic rRNA processing
Genome location	scaffold8:38726500..38727221
RNA-Seq Expression	Spg001413
Synteny	Spg001413
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0034399 - nuclear periphery (cellular component)
InterPro domains	IPR008610 - Eukaryotic rRNA processing

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055124.1 putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa]

1.9e-43

89.29

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL
        MGVS K+A FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLAREL
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL

Query:  AFYTQALQGTRM
        AFYTQALQGTRM
Subjt:  AFYTQALQGTRM

KAG7035578.1 putative rRNA-processing protein EBP2-like protein [Cucurbita argyrosperma subsp. argyrosperma]

7.9e-45

90.99

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNA+YNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

XP_022926294.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]

6.0e-45

87.93

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL
        MGVSDK+ARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKLSEPSK AIYNADGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDL
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL

Query:  ARELAFYTQALQGTRM
        ARELAFYTQALQGTRM
Subjt:  ARELAFYTQALQGTRM

XP_022958567.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]

6.0e-45

91.89

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

XP_022995363.1 probable rRNA-processing protein EBP2 homolog [Cucurbita maxima]

1.5e-43

89.19

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   F+NEDTMEDDDL SEDSDFG    SESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CT69 probable rRNA-processing protein EBP2 homolog

1.6e-43

89.29

Show/hide

Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL
        MGVS K+A FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLAREL
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL

Query:  AFYTQALQGTRM
        AFYTQALQGTRM
Subjt:  AFYTQALQGTRM

A0A5D3DB33 Putative rRNA-processing protein EBP2-like protein

9.4e-44

89.29

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL
        MGVS K+A FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLAREL
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL

Query:  AFYTQALQGTRM
        AFYTQALQGTRM
Subjt:  AFYTQALQGTRM

A0A6J1EEP4 probable rRNA-processing protein EBP2 homolog

2.9e-45

87.93

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL
        MGVSDK+ARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKLSEPSK AIYNADGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDL
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL

Query:  ARELAFYTQALQGTRM
        ARELAFYTQALQGTRM
Subjt:  ARELAFYTQALQGTRM

A0A6J1H264 probable rRNA-processing protein EBP2 homolog

2.9e-45

91.89

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

A0A6J1K7Q8 probable rRNA-processing protein EBP2 homolog

7.2e-44

89.19

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Query:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   F+NEDTMEDDDL SEDSDFG    SESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

SwissProt top hits

e value

%identity

Alignment

Q9LUJ5 Probable rRNA-processing protein EBP2 homolog

1.5e-25

61.54

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Query:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL
        L ED + DD++   D    +D  +ES S+S++E E   KL+EP+K AIYN DGLLDKL DISWPE+V+W HKLT++IDQ   VDVNDDLARE AFYTQAL
Subjt:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL

Query:  QGTR
        +GTR
Subjt:  QGTR

Arabidopsis top hits

e value

%identity

Alignment

AT3G22660.1 rRNA processing protein-related

1.0e-26

61.54

Show/hide

Query:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL
        L ED + DD++   D    +D  +ES S+S++E E   KL+EP+K AIYN DGLLDKL DISWPE+V+W HKLT++IDQ   VDVNDDLARE AFYTQAL
Subjt:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL

Query:  QGTR
        +GTR
Subjt:  QGTR

Sequences

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CDS sequence

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ATGGGTGTATCAGATAAAAATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCAGATTTTGGATCTGAATCTGCATCTGAATCTGA
ATCTGAGGAGGAAGAGGATGTAAAATTATCTGAACCATCAAAGAATGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGG
AATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGCAGGGGACAAGA
ATGGTGAAGGATTGGAATTCCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTATCTGA
GAGTAGGAGAATGAATGGGATCCCTTTCACCCCACCCCAGGGGTCCTATATATAG

mRNA sequence

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Protein sequence

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MGVSDKNARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQALQGTR
MVKDWNSCEHHHYGYTGMTLRLLEAGDLWEPLGELSESRRMNGIPFTPPQGSYI

Spg001413 (gene) of Sponge gourd (cylindrica) v1 genome