; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001479 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001479
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionABC transporter E family member 2
Genome locationscaffold8:44075241..44079882
RNA-Seq ExpressionSpg001479
SyntenySpg001479
Gene Ontology termsGO:0000054 - ribosomal subunit export from nucleus (biological process)
GO:0006413 - translational initiation (biological process)
GO:0006415 - translational termination (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0016020 - membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0043024 - ribosomal small subunit binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR013283 - RLI1
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8051364.1 hypothetical protein N665_1739s0004 [Sinapis alba]2.6e-2683.54Show/hide
Query:  IIAICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK
        ++ + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK
Subjt:  IIAICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK

RXH73400.1 hypothetical protein DVH24_013084 [Malus domestica]6.8e-2778.26Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS A T
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT

RXH91004.1 hypothetical protein DVH24_020027 [Malus domestica]6.8e-2778.26Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS A T
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT

THU52866.1 hypothetical protein C4D60_Mb10t08430 [Musa balbisiana]2.0e-2666.1Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPTGDINLLDV
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQVIRSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS     +I L   
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPTGDINLLDV

Query:  HLGLYDSSNVKRRSLCLM
          G   + N++ R   LM
Subjt:  HLGLYDSSNVKRRSLCLM

TQE07475.1 hypothetical protein C1H46_006795 [Malus baccata]6.8e-2778.26Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS A T
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT

TrEMBL top hitse value%identityAlignment
A0A398AKC9 Uncharacterized protein1.3e-2683.54Show/hide
Query:  IIAICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK
        ++ + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK
Subjt:  IIAICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK

A0A498HRM4 Uncharacterized protein3.3e-2778.26Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS A T
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT

A0A498JA34 Uncharacterized protein3.3e-2778.26Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS A T
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT

A0A4V4H4N4 Uncharacterized protein9.6e-2766.1Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPTGDINLLDV
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQVIRSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS     +I L   
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPTGDINLLDV

Query:  HLGLYDSSNVKRRSLCLM
          G   + N++ R   LM
Subjt:  HLGLYDSSNVKRRSLCLM

A0A540N8X7 Uncharacterized protein3.3e-2778.26Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK        LPFS A T
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEK---KKLPFSSAPT

SwissProt top hitse value%identityAlignment
G0SEV9 Translation initiation factor RLI12.1e-2371.05Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK
        + GGELQ FAI  V +Q A++YMFDEPS YLDVKQRL AA++IRSLLRP  YVIVVEHDLSVLD LSD +C  YG+
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK

P61221 ATP-binding cassette sub-family E member 16.2e-2373.33Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYG
        + GGELQ FA  VV IQ A+I+MFDEPS YLDVKQRLKAA  IRSL+ P  Y+IVVEHDLSVLD LSD ICC YG
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYG

Q8LPJ4 ABC transporter E family member 25.8e-2986.84Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK

Q9LID6 ABC transporter E family member 18.6e-2576.32Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK
        + GGELQ FAI  V ++ A+IYMFDEPS YLDV+QRLKAAQVIRSLLR  SYVIVVEHDLSVLD LSD +CC YGK
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK

Q9VSS1 Protein Pixie2.8e-2371.79Show/hide
Query:  IIAICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYG
        I  + GGELQ FAI +V IQNA+I+MFDEPS YLDVKQRL AA  IRSLL P+ ++IVVEHDLSVLD LSD ICC YG
Subjt:  IIAICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYG

Arabidopsis top hitse value%identityAlignment
AT2G31970.1 DNA repair-recombination protein (RAD50)2.4e-1470.37Show/hide
Query:  YDSSNVKRRSLCLMGVLKAILKSVIFVHQDETNWPLQDLSTSKKKFDDIFSATR
        Y  +++ R    LMGV KAIL++VIFVHQDE+NWPLQD ST KKKFDDIFSATR
Subjt:  YDSSNVKRRSLCLMGVLKAILKSVIFVHQDETNWPLQDLSTSKKKFDDIFSATR

AT2G31970.1 DNA repair-recombination protein (RAD50)4.4e-0861.36Show/hide
Query:  EYDDLNSKSREAEKDVNMLQMKIQEVNNNLSRYQNEMECKFSFL
        EYDDL+ KSREAEK+VNMLQMKIQEVNN+L ++  + E +  ++
Subjt:  EYDDLNSKSREAEKDVNMLQMKIQEVNNNLSRYQNEMECKFSFL

AT3G13640.1 RNAse l inhibitor protein 16.1e-2676.32Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK
        + GGELQ FAI  V ++ A+IYMFDEPS YLDV+QRLKAAQVIRSLLR  SYVIVVEHDLSVLD LSD +CC YGK
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK

AT4G19210.1 RNAse l inhibitor protein 24.1e-3086.84Show/hide
Query:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK
        + GGELQ FAI VVAIQNAEIYMFDEPS YLDVKQRLKAAQV+RSLLRP+SYVIVVEHDLSVLD LSD ICC YGK
Subjt:  ICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGK

AT5G05730.1 anthranilate synthase alpha subunit 13.0e-0473.08Show/hide
Query:  EKKKLPFSSAPTGDINLLDVHLGLYD
        EK+KLPFS AP  D NL D+HLGLYD
Subjt:  EKKKLPFSSAPTGDINLLDVHLGLYD

AT5G05730.2 anthranilate synthase alpha subunit 13.0e-0473.08Show/hide
Query:  EKKKLPFSSAPTGDINLLDVHLGLYD
        EK+KLPFS AP  D NL D+HLGLYD
Subjt:  EKKKLPFSSAPTGDINLLDVHLGLYD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGATCATTGCGATCTGTGGTGGAGAACTTCAAGGATTTGCCATTGATGTTGTTGCCATACAGAATGCAGAGATCTATATGTTTGATGAACCCTCAATTTACCT
TGATGTAAAACAGAGACTTAAAGCTGCTCAAGTGATTCGGTCTTTGCTCAGGCCCTCTAGCTATGTAATCGTCGTGGAGCACGATCTTAGTGTCTTGGATTGCTTGTCTG
ACTCTATTTGCTGTCGTTATGGGAAGTCGGAAAAAAAGAAATTGCCATTCTCTAGTGCACCAACTGGTGACATAAACCTTCTTGATGTTCATCTAGGACTTTATGATTCA
TCTAACGTAAAGAGGAGATCTCTGTGTTTAATGGGTGTGTTAAAGGCTATTCTGAAAAGTGTGATATTTGTTCACCAAGATGAAACTAACTGGCCATTGCAAGATCTTTC
GACGTCAAAGAAGAAATTTGATGATATTTTCTCTGCCACAAGGCGAAGTCCGCAAGCTTCATCTGAAGCATCTTCTTTCAGTGGCAGCATTCTGACTAACGAACCGAGTC
CCGAGCCCATGTTGATTCTAGGGTTTGAAACTCCATTCCACTCTACCATAATTGAATGCTTGAAACTCTCTTGTACCGGCGAGTTGCCTCCCAATGCCAGGTCTGGCCAC
ACAAGAAAGAGATTTGTTGAATCCAAACTCCATGCTTTGGTGCATTATCTGCAAGTACAATATTTGCAGATGGAGATTGTTCTTGTTGTGATGATTCAATTGAATGAGCT
TTATTATCTTTGCAATAGCCATGGCGTTACCTTCCTTTCAAAGAACAAGTTTGGGTCTTCTTTTGTCTTATCTCAGAGCTGTTGGTATATGGAGTATGATGACCTAAATT
CTAAATCTCGTGAAGCTGAGAAGGATGTGAATATGTTGCAAATGAAAATACAGGAAGTTAACAACAACCTTTCTAGATATCAAAACGAAATGGAATGCAAGTTTTCCTTT
TTGGCAGTATTTAAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGATCATTGCGATCTGTGGTGGAGAACTTCAAGGATTTGCCATTGATGTTGTTGCCATACAGAATGCAGAGATCTATATGTTTGATGAACCCTCAATTTACCT
TGATGTAAAACAGAGACTTAAAGCTGCTCAAGTGATTCGGTCTTTGCTCAGGCCCTCTAGCTATGTAATCGTCGTGGAGCACGATCTTAGTGTCTTGGATTGCTTGTCTG
ACTCTATTTGCTGTCGTTATGGGAAGTCGGAAAAAAAGAAATTGCCATTCTCTAGTGCACCAACTGGTGACATAAACCTTCTTGATGTTCATCTAGGACTTTATGATTCA
TCTAACGTAAAGAGGAGATCTCTGTGTTTAATGGGTGTGTTAAAGGCTATTCTGAAAAGTGTGATATTTGTTCACCAAGATGAAACTAACTGGCCATTGCAAGATCTTTC
GACGTCAAAGAAGAAATTTGATGATATTTTCTCTGCCACAAGGCGAAGTCCGCAAGCTTCATCTGAAGCATCTTCTTTCAGTGGCAGCATTCTGACTAACGAACCGAGTC
CCGAGCCCATGTTGATTCTAGGGTTTGAAACTCCATTCCACTCTACCATAATTGAATGCTTGAAACTCTCTTGTACCGGCGAGTTGCCTCCCAATGCCAGGTCTGGCCAC
ACAAGAAAGAGATTTGTTGAATCCAAACTCCATGCTTTGGTGCATTATCTGCAAGTACAATATTTGCAGATGGAGATTGTTCTTGTTGTGATGATTCAATTGAATGAGCT
TTATTATCTTTGCAATAGCCATGGCGTTACCTTCCTTTCAAAGAACAAGTTTGGGTCTTCTTTTGTCTTATCTCAGAGCTGTTGGTATATGGAGTATGATGACCTAAATT
CTAAATCTCGTGAAGCTGAGAAGGATGTGAATATGTTGCAAATGAAAATACAGGAAGTTAACAACAACCTTTCTAGATATCAAAACGAAATGGAATGCAAGTTTTCCTTT
TTGGCAGTATTTAAGGAATGA
Protein sequenceShow/hide protein sequence
MLVIIAICGGELQGFAIDVVAIQNAEIYMFDEPSIYLDVKQRLKAAQVIRSLLRPSSYVIVVEHDLSVLDCLSDSICCRYGKSEKKKLPFSSAPTGDINLLDVHLGLYDS
SNVKRRSLCLMGVLKAILKSVIFVHQDETNWPLQDLSTSKKKFDDIFSATRRSPQASSEASSFSGSILTNEPSPEPMLILGFETPFHSTIIECLKLSCTGELPPNARSGH
TRKRFVESKLHALVHYLQVQYLQMEIVLVVMIQLNELYYLCNSHGVTFLSKNKFGSSFVLSQSCWYMEYDDLNSKSREAEKDVNMLQMKIQEVNNNLSRYQNEMECKFSF
LAVFKE