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Spg001539 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001539
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold10:103994..104506
RNA-Seq ExpressionSpg001539
SyntenySpg001539
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99083.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.7e-1782.46Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH
        IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH

XP_004137641.1 pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]1.5e-1884.21Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH
        IR+SV+G FFA++L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH

XP_008446053.1 PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo]1.7e-1782.46Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH
        IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH

XP_022137264.1 pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia]2.0e-1885.96Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI
        MIR+SV+G FFAE L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLI
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI

XP_038893873.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida]6.4e-1779.66Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRR
        IR SV+G FF E L+TYSFM HSGIHGNNFTFPLLLKAC+NLA I DGTMLHAHLI  R
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRR

TrEMBL top hitse value%identityAlignment
A0A0A0LT91 Uncharacterized protein7.3e-1984.21Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH
        IR+SV+G FFA++L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH

A0A1J7ICK8 Uncharacterized protein8.7e-1264.91Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI
        MIR S +  FF E LK Y+ M HSG+HGN FT+PLLLKACANL  IS GTMLH H++
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI

A0A1S3BDP0 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like8.1e-1882.46Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH
        IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH

A0A5D3BIG9 Pentatricopeptide repeat-containing protein8.1e-1882.46Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH
        IR+SV+G FFA+ L+TYSFM  SGIHGNNFTFPLLLKACANLA I DGTMLHAHLIH
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIH

A0A6J1C6R4 pentatricopeptide repeat-containing protein At2g13600-like9.6e-1985.96Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI
        MIR+SV+G FFAE L+TYSFM HSGIHGNNFTFPLLLKACANLA I DGTMLHAHLI
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI

SwissProt top hitse value%identityAlignment
P0C8Q2 Pentatricopeptide repeat-containing protein At4g19191, mitochondrial1.3e-0444.64Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI
        IR +V+     E+L  +  M   G   NNFTFP + KACA LA +    M+HAHLI
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI

Q9C6T2 Pentatricopeptide repeat-containing protein At1g319204.9e-0442.86Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL
        MIR  V+   F EAL  Y+ M   G   +NFT+P LLKAC  L  I +G  +H  +
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL

Q9FRI5 Pentatricopeptide repeat-containing protein At1g253606.4e-0435.48Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRRAY
        MI   V+  F+ EAL+    M  SGI  + FT+P +++ACA   L+  G  +HA+++ R  +
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRRAY

Q9LUS3 Pentatricopeptide repeat-containing protein At3g166108.1e-0742.86Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL
        MIR   S +F  +AL  Y  M +SG+    +T+P +LKACA L  I DG ++H+H+
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL

Arabidopsis top hitse value%identityAlignment
AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein4.6e-0535.48Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRRAY
        MI   V+  F+ EAL+    M  SGI  + FT+P +++ACA   L+  G  +HA+++ R  +
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRRAY

AT1G31920.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.5e-0542.86Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL
        MIR  V+   F EAL  Y+ M   G   +NFT+P LLKAC  L  I +G  +H  +
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL

AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein1.0e-0441.3Show/hide
Query:  FAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL
        F+E++  Y  M  SG   + F+FP +LK+CA+L+L   G  LH H+
Subjt:  FAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL

AT3G16610.1 pentatricopeptide (PPR) repeat-containing protein5.8e-0842.86Show/hide
Query:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL
        MIR   S +F  +AL  Y  M +SG+    +T+P +LKACA L  I DG ++H+H+
Subjt:  MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHL

AT4G19191.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.2e-0644.64Show/hide
Query:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI
        IR +V+     E+L  +  M   G   NNFTFP + KACA LA +    M+HAHLI
Subjt:  IRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCGAACCTCCGTCAGTGGCGAGTTCTTCGCCGAAGCTCTCAAAACCTACTCATTTATGTGGCACTCTGGAATTCATGGCAACAATTTTACTTTTCCTCTCCTCCT
CAAGGCTTGTGCCAATCTTGCTCTGATCAGTGATGGCACAATGCTCCACGCTCACCTCATCCATCGAAGGGCATATTTTCCTCGTAATCCATATGCAGACCTTATAACAC
AGACTCGCAAGCCATCATCTTCTCCGAATGCAGATGACAATATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCGAACCTCCGTCAGTGGCGAGTTCTTCGCCGAAGCTCTCAAAACCTACTCATTTATGTGGCACTCTGGAATTCATGGCAACAATTTTACTTTTCCTCTCCTCCT
CAAGGCTTGTGCCAATCTTGCTCTGATCAGTGATGGCACAATGCTCCACGCTCACCTCATCCATCGAAGGGCATATTTTCCTCGTAATCCATATGCAGACCTTATAACAC
AGACTCGCAAGCCATCATCTTCTCCGAATGCAGATGACAATATCTGA
Protein sequenceShow/hide protein sequence
MIRTSVSGEFFAEALKTYSFMWHSGIHGNNFTFPLLLKACANLALISDGTMLHAHLIHRRAYFPRNPYADLITQTRKPSSSPNADDNI