; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001541 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001541
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransportin-3 isoform X1
Genome locationscaffold10:160636..161628
RNA-Seq ExpressionSpg001541
SyntenySpg001541
Gene Ontology termsNA
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048525.1 transportin-3 isoform X1 [Cucumis melo var. makuwa]4.8e-3396.15Show/hide
Query:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSSFVPDLEVEFFAAQILKRK
Subjt:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
TYK28316.1 transportin-3 isoform X1 [Cucumis melo var. makuwa]4.8e-3396.15Show/hide
Query:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSSFVPDLEVEFFAAQILKRK
Subjt:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
XP_022148144.1 transportin-3 isoform X2 [Momordica charantia]8.2e-3396.05Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFVP+LEVEFFAAQILKRK
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
XP_022148146.1 transportin MOS14 isoform X3 [Momordica charantia]8.2e-3396.05Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFVP+LEVEFFAAQILKRK
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
XP_038891351.1 transportin-3 [Benincasa hispida]2.5e-34100Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
TrEMBL top hitse value%identityAlignment
A0A5A7U4I2 Transportin-3 isoform X12.3e-3396.15Show/hide
Query:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSSFVPDLEVEFFAAQILKRK
Subjt:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
A0A5D3DX38 Transportin-3 isoform X12.3e-3396.15Show/hide
Query:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSSFVPDLEVEFFAAQILKRK
Subjt:  KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
A0A6J1D3A4 transportin-3 isoform X44.0e-3396.05Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFVP+LEVEFFAAQILKRK
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
A0A6J1D496 transportin-3 isoform X14.0e-3396.05Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFVP+LEVEFFAAQILKRK
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
A0A6J1D4H9 transportin MOS14 isoform X34.0e-3396.05Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFVP+LEVEFFAAQILKRK
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12930.1 ARM repeat superfamily protein2.7e-1860.53Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        MEL+ KV +A+HVLNHD +S NRVAANQWLVQFQ T AAW+V+T++LTS     P+ S     +++FFAAQIL+RK
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
AT5G62600.1 ARM repeat superfamily protein6.5e-0436.84Show/hide
Query:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK
        ME +  V +A++ L H      RV A++WL  FQ T  AW+VA      D++ H  SS   +LE   F +Q L+ K
Subjt:  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAACGATTACGTGGTAAAGTGATGGAATTGCGAATGAAAGTCACTCAAGCAGTTCACGTCCTAAATCATGATACCCAATCTTGCAACCGTGTGGCAGCAAATCA
ATGGTTAGTTCAGTTTCAACAGACAGGTGCTGCTTGGGAAGTTGCCACTGCTATCCTTACCTCCGATCACGTTCAACATCCGCTGTCCTCCTTTGTCCCTGATTTGGAAG
TCGAGTTCTTTGCTGCTCAGATTCTTAAACGCAAGAACCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAACGATTACGTGGTAAAGTGATGGAATTGCGAATGAAAGTCACTCAAGCAGTTCACGTCCTAAATCATGATACCCAATCTTGCAACCGTGTGGCAGCAAATCA
ATGGTTAGTTCAGTTTCAACAGACAGGTGCTGCTTGGGAAGTTGCCACTGCTATCCTTACCTCCGATCACGTTCAACATCCGCTGTCCTCCTTTGTCCCTGATTTGGAAG
TCGAGTTCTTTGCTGCTCAGATTCTTAAACGCAAGAACCCTTAG
Protein sequenceShow/hide protein sequence
MVERLRGKVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRKNP