; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001557 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001557
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold8:32197878..32201348
RNA-Seq ExpressionSpg001557
SyntenySpg001557
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.8e-1432.57Show/hide
Query:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL
        S GR    KG             N+ L L + R   +  A  QW PP    WKL  +A+W  + N GGIGW++R   G ++ +  R +  +  + +LE +
Subjt:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL

Query:  AALEGVRTIPKNSLK-VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
        A  EG+R I +   + + +E DS + ++LL  + +D  EI   +EE   ++    +VS+ HISR +N +AH LAR
Subjt:  AALEGVRTIPKNSLK-VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.3e-1736.31Show/hide
Query:  ELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSL--KVFIELDSSQV
        E ++S    +++ + +W PPP   W L  DASWSD  +RGGIGW+IR WDG +V +G R V     +  LEA A LEG+R +    +   + IE DS++V
Subjt:  ELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSL--KVFIELDSSQV

Query:  VNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLARSGWALNSS
         +LL  + ED+ +    +EE   L  +  +++   + R +N  AH LA+    L  S
Subjt:  VNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLARSGWALNSS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]8.8e-1430.6Show/hide
Query:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL
        S GR    KG    +D+             + R   +  AR  W PP    WKL  DA+W  + N GGIGW++R   G ++ +  R +  +  + +LE +
Subjt:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL

Query:  AALEGVRTIPKNSLK---------VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
        A  EG+R I +   +         + +E DS + ++LL  + +D  EI   +EE   ++    +VS+ HISR +N +AH LAR
Subjt:  AALEGVRTIPKNSLK---------VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR

XP_024033599.1 uncharacterized protein LOC112095720 [Citrus clementina]7.2e-1640.15Show/hide
Query:  SARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPK-NSLKVFIELDSSQVVNLLLGREEDVI
        + +Q W PPP GC+K+  DA+ +  K RGGIG V+R   G  VA+  +    K  +  +EA A L G++   K N     IE DS +VV L+L R+  ++
Subjt:  SARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPK-NSLKVFIELDSSQVVNLLLGREEDVI

Query:  EISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
        EIS  IEE Q  +   N  SI ++ RR N  AH+LA+
Subjt:  EISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR

XP_024042448.1 uncharacterized protein LOC112099303 [Citrus clementina]9.4e-1640.15Show/hide
Query:  SARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSLKVF-IELDSSQVVNLLLGREEDVI
        + +Q W PPP GC+K+  DA+ +  K RGGIG V+R   G  VA+  +    K  +  +EA A L G++   K +   F IE DS +VV L+L R+  ++
Subjt:  SARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSLKVF-IELDSSQVVNLLLGREEDVI

Query:  EISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
        EIS  IEE Q  +   N  SI ++ RR N  AH+LA+
Subjt:  EISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR

TrEMBL top hitse value%identityAlignment
A0A1S8ADA4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment)2.2e-1030.77Show/hide
Query:  YKGNDLV-QDIDTDPCNN--QSLELAVSRDRSSVSARQ-----------QWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWR
        Y  N LV +  D DP N+  +++ +  S  R  V   Q           +W  PPKGC+K+  DA+ +    + G+G VIR   G +VA+  +   ++  
Subjt:  YKGNDLV-QDIDTDPCNN--QSLELAVSRDRSSVSARQ-----------QWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWR

Query:  MCWLEALAALEGVRTIPKNSL-KVFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
        +  +EA A L G+++  + ++  + IE DS +VV+L L ++    EI   I E QA +   NV S+ ++ R  N +AH +A+
Subjt:  MCWLEALAALEGVRTIPKNSL-KVFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR

A0A6J1CP26 uncharacterized protein LOC1110134128.5e-1532.57Show/hide
Query:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL
        S GR    KG             N+ L L + R   +  A  QW PP    WKL  +A+W  + N GGIGW++R   G ++ +  R +  +  + +LE +
Subjt:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL

Query:  AALEGVRTIPKNSLK-VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
        A  EG+R I +   + + +E DS + ++LL  + +D  EI   +EE   ++    +VS+ HISR +N +AH LAR
Subjt:  AALEGVRTIPKNSLK-VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR

A0A6J1DNV9 uncharacterized protein LOC1110224036.3e-1836.31Show/hide
Query:  ELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSL--KVFIELDSSQV
        E ++S    +++ + +W PPP   W L  DASWSD  +RGGIGW+IR WDG +V +G R V     +  LEA A LEG+R +    +   + IE DS++V
Subjt:  ELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSL--KVFIELDSSQV

Query:  VNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLARSGWALNSS
         +LL  + ED+ +    +EE   L  +  +++   + R +N  AH LA+    L  S
Subjt:  VNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLARSGWALNSS

A0A6J1DSV1 uncharacterized protein LOC1110236084.2e-1430.6Show/hide
Query:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL
        S GR    KG    +D+             + R   +  AR  W PP    WKL  DA+W  + N GGIGW++R   G ++ +  R +  +  + +LE +
Subjt:  SVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEAL

Query:  AALEGVRTIPKNSLK---------VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
        A  EG+R I +   +         + +E DS + ++LL  + +D  EI   +EE   ++    +VS+ HISR +N +AH LAR
Subjt:  AALEGVRTIPKNSLK---------VFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR

A0A803PZC5 Uncharacterized protein2.4e-0933.1Show/hide
Query:  WLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSLKV-FIELDSSQVVNLLLGREEDVIEISQF
        W PPP G  K+  DA+    KNR G+G VIR   G ++A+    ++  +    +EA A    +    +  L++  +E D+  V N L GR   +   +  
Subjt:  WLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPKNSLKV-FIELDSSQVVNLLLGREEDVIEISQF

Query:  IEEAQALISAANVVSIFHISRRSNYMAHHLARSGWALNSSECCRW
        I +   L+S    VSI H+ R +N  AH LAR  +AL   E C W
Subjt:  IEEAQALISAANVVSIFHISRRSNYMAHHLARSGWALNSSECCRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0528.57Show/hide
Query:  QWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPK-NSLKVFIELDSSQVVNLLLGREEDVIEISQ
        QW  PP    K   DA+W  E  R GIGW++R   G ++  G R +     +   E  A    V T+ + N  ++  E D+  +VN LL  ++    +  
Subjt:  QWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALEGVRTIPK-NSLKVFIELDSSQVVNLLLGREEDVIEISQ

Query:  FIEEAQALISAANVVSIFHISRRSNYMAHHLAR
         +E+ Q L+     V      R  N +A  +AR
Subjt:  FIEEAQALISAANVVSIFHISRRSNYMAHHLAR

AT4G29090.1 Ribonuclease H-like superfamily protein6.5e-0724.18Show/hide
Query:  ESKRESVGRRQQYKGNDLVQDIDTDPCN---NQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKW
        +++ E V R +++   ++++  + D          E   ++ + + S+  +W PPP    K   DA+W+ +  R GIGWV+R   G +   G R +    
Subjt:  ESKRESVGRRQQYKGNDLVQDIDTDPCN---NQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKW

Query:  RMCWLEALAALEGVRTIPKNSLKVFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR
         +   E  A    V ++ +      I    SQV+  +L  +E    +   I++ Q L+S    V    I R  N +A  +AR
Subjt:  RMCWLEALAALEGVRTIPKNSLKVFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCCAAGCGGGAATCGGTTGGACGACGACAACAATACAAGGGGAATGATCTTGTGCAAGATATTGATACTGACCCGTGCAATAATCAGAGTCTGGAGCTTGCGGT
TTCTAGGGATCGGTCCTCTGTTAGCGCTCGGCAACAATGGCTTCCACCACCGAAGGGTTGTTGGAAGCTTACCTGCGATGCTTCGTGGAGCGATGAAAAGAACAGAGGTG
GAATCGGCTGGGTGATTCGGCGATGGGATGGTTCGATGGTGGCTTCTGGTTTTCGAAATGTCATGTGGAAATGGAGGATGTGCTGGTTGGAAGCCCTAGCAGCGCTTGAA
GGTGTGAGGACGATTCCAAAAAACTCCCTCAAGGTATTCATCGAGCTTGACTCTAGTCAGGTGGTGAATCTATTGTTAGGGAGAGAGGAAGATGTAATTGAAATCTCACA
GTTCATTGAAGAAGCCCAAGCATTGATCTCGGCTGCAAATGTGGTCTCCATCTTTCACATATCTAGAAGAAGTAACTATATGGCCCATCATCTTGCTAGATCAGGATGGG
CTTTAAACTCTTCAGAGTGTTGTCGGTGGCCACCGCCGCCGCCTGGAACGGGGAGGGAGGAGGGAGGTCCCTCCTCCCTCTTCGGCGCCGGAATCGAAGGGGGTTTTCCC
CCTTCAAAACGGAAGGAGGGTAAGAGAGTAAGAGAAGAGAGTCGAGAATTGAGAGTTCGGATCCCCTTCTTCAGTGGCGAAGAGGGGTATAAACTGCTCATGCTCCTAGG
GTTTTTAGGAATTCAGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGTGGCCAGAAGCAGGAAGGCCCGAGCGGAGGCAAACGGACTCGGCCCGTGCAAGCGGGCCGA
GTGGTGCCGAGGCCGACCGTACGTGTCGGGCCACGTTGGCCCAGCCCGTTGGTCCGATCTTCCTCTGGGTCGTCTCCTGGTCCTCTCTCCGCCCGGTTGTCCTCGTCAGC
TCCTTGTACACCATGGTGGTCCAAAATTACCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCCAAGCGGGAATCGGTTGGACGACGACAACAATACAAGGGGAATGATCTTGTGCAAGATATTGATACTGACCCGTGCAATAATCAGAGTCTGGAGCTTGCGGT
TTCTAGGGATCGGTCCTCTGTTAGCGCTCGGCAACAATGGCTTCCACCACCGAAGGGTTGTTGGAAGCTTACCTGCGATGCTTCGTGGAGCGATGAAAAGAACAGAGGTG
GAATCGGCTGGGTGATTCGGCGATGGGATGGTTCGATGGTGGCTTCTGGTTTTCGAAATGTCATGTGGAAATGGAGGATGTGCTGGTTGGAAGCCCTAGCAGCGCTTGAA
GGTGTGAGGACGATTCCAAAAAACTCCCTCAAGGTATTCATCGAGCTTGACTCTAGTCAGGTGGTGAATCTATTGTTAGGGAGAGAGGAAGATGTAATTGAAATCTCACA
GTTCATTGAAGAAGCCCAAGCATTGATCTCGGCTGCAAATGTGGTCTCCATCTTTCACATATCTAGAAGAAGTAACTATATGGCCCATCATCTTGCTAGATCAGGATGGG
CTTTAAACTCTTCAGAGTGTTGTCGGTGGCCACCGCCGCCGCCTGGAACGGGGAGGGAGGAGGGAGGTCCCTCCTCCCTCTTCGGCGCCGGAATCGAAGGGGGTTTTCCC
CCTTCAAAACGGAAGGAGGGTAAGAGAGTAAGAGAAGAGAGTCGAGAATTGAGAGTTCGGATCCCCTTCTTCAGTGGCGAAGAGGGGTATAAACTGCTCATGCTCCTAGG
GTTTTTAGGAATTCAGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGTGGCCAGAAGCAGGAAGGCCCGAGCGGAGGCAAACGGACTCGGCCCGTGCAAGCGGGCCGA
GTGGTGCCGAGGCCGACCGTACGTGTCGGGCCACGTTGGCCCAGCCCGTTGGTCCGATCTTCCTCTGGGTCGTCTCCTGGTCCTCTCTCCGCCCGGTTGTCCTCGTCAGC
TCCTTGTACACCATGGTGGTCCAAAATTACCTATAA
Protein sequenceShow/hide protein sequence
MESKRESVGRRQQYKGNDLVQDIDTDPCNNQSLELAVSRDRSSVSARQQWLPPPKGCWKLTCDASWSDEKNRGGIGWVIRRWDGSMVASGFRNVMWKWRMCWLEALAALE
GVRTIPKNSLKVFIELDSSQVVNLLLGREEDVIEISQFIEEAQALISAANVVSIFHISRRSNYMAHHLARSGWALNSSECCRWPPPPPGTGREEGGPSSLFGAGIEGGFP
PSKRKEGKRVREESRELRVRIPFFSGEEGYKLLMLLGFLGIQRRFGTNQAEPGWPEAGRPERRQTDSARASGPSGAEADRTCRATLAQPVGPIFLWVVSWSSLRPVVLVS
SLYTMVVQNYL