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Spg001560 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001560
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontransportin-3 isoform X2
Genome locationscaffold10:295628..296675
RNA-Seq ExpressionSpg001560
SyntenySpg001560
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581155.1 Transportin-3, partial [Cucurbita argyrosperma subsp. sororia]6.0e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
KAG7017889.1 Transportin-3 [Cucurbita argyrosperma subsp. argyrosperma]7.9e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
XP_022934438.1 transportin-3 isoform X2 [Cucurbita moschata]7.9e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
XP_022983999.1 transportin-3 isoform X1 [Cucurbita maxima]7.9e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
XP_023526726.1 transportin-3 isoform X1 [Cucurbita pepo subsp. pepo]7.9e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
TrEMBL top hitse value%identityAlignment
A0A1S3BN70 transportin-3 isoform X11.1e-3893.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLK VLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
A0A6J1F1T5 transportin-3 isoform X13.8e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
A0A6J1F7N6 transportin-3 isoform X23.8e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
A0A6J1J0X3 transportin-3 isoform X23.8e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
A0A6J1J969 transportin-3 isoform X13.8e-3993.81Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
        FLDVS+ASMLEFAST SEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCAT+LQQLAAICSVSERTDLKAVLRWESLHGWLLSAV +L L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12930.1 ARM repeat superfamily protein1.5e-2763.16Show/hide
Query:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSL
        FL+VS++SM+E  +++S+GSF+ + + V+SH GEGL+SN++YALLGV+AMSRVHKC+TILQQLAAICS+ ERT  K +L W+SL GWL SAV +L
Subjt:  FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCTTGGATGTTAGCATAGCATCAATGTTAGAATTTGCAAGTACCGTTTCTGAGGGATCTTTCAATTCTATGGTTATTCATGTTCTATCCCACAGCGGCGAGGGACTTGT
ATCCAACATTCTATATGCTTTGCTTGGTGTTTCAGCAATGTCACGGGTTCATAAGTGTGCAACAATTCTGCAACAGTTGGCAGCAATTTGCAGTGTCAGTGAAAGAACGG
ACTTGAAAGCTGTTCTGCGCTGGGAATCTTTGCATGGCTGGCTACTATCAGCGGTTCTCTCTCTCTCTCTCTTTCTCTCTCTATCTCTCTATGTATCTATATATAAACAG
TTTGTAAATATTGACTCTGTATAA
mRNA sequenceShow/hide mRNA sequence
TTCTTGGATGTTAGCATAGCATCAATGTTAGAATTTGCAAGTACCGTTTCTGAGGGATCTTTCAATTCTATGGTTATTCATGTTCTATCCCACAGCGGCGAGGGACTTGT
ATCCAACATTCTATATGCTTTGCTTGGTGTTTCAGCAATGTCACGGGTTCATAAGTGTGCAACAATTCTGCAACAGTTGGCAGCAATTTGCAGTGTCAGTGAAAGAACGG
ACTTGAAAGCTGTTCTGCGCTGGGAATCTTTGCATGGCTGGCTACTATCAGCGGTTCTCTCTCTCTCTCTCTTTCTCTCTCTATCTCTCTATGTATCTATATATAAACAG
TTTGTAAATATTGACTCTGTATAA
Protein sequenceShow/hide protein sequence
FLDVSIASMLEFASTVSEGSFNSMVIHVLSHSGEGLVSNILYALLGVSAMSRVHKCATILQQLAAICSVSERTDLKAVLRWESLHGWLLSAVLSLSLFLSLSLYVSIYKQ
FVNIDSV