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Spg001599 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001599
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontransportin-3 isoform X1
Genome locationscaffold10:263054..267910
RNA-Seq ExpressionSpg001599
SyntenySpg001599
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR011989 - Armadillo-like helical


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449960.1 PREDICTED: transportin-3 isoform X2 [Cucumis melo]9.1e-4888.89Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASV AINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYV-----NLFEFAYT
        SC++     ++ EFA T
Subjt:  SCYV-----NLFEFAYT

XP_022148142.1 transportin-3 isoform X1 [Momordica charantia]4.1e-4894.34Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIF+RCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYVNL
        SC++++
Subjt:  SCYVNL

XP_022148144.1 transportin-3 isoform X2 [Momordica charantia]4.1e-4894.34Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIF+RCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYVNL
        SC++++
Subjt:  SCYVNL

XP_022148146.1 transportin MOS14 isoform X3 [Momordica charantia]4.1e-4894.34Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIF+RCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYVNL
        SC++++
Subjt:  SCYVNL

XP_038891351.1 transportin-3 [Benincasa hispida]9.1e-4888.89Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASV AINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYV-----NLFEFAYT
        SC++     ++ EFA T
Subjt:  SCYV-----NLFEFAYT

TrEMBL top hitse value%identityAlignment
A0A1S3BN70 transportin-3 isoform X14.4e-4888.89Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASV AINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYV-----NLFEFAYT
        SC++     ++ EFA T
Subjt:  SCYV-----NLFEFAYT

A0A5A7U2P7 Transportin-3 isoform X14.4e-4888.89Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASV AINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYV-----NLFEFAYT
        SC++     ++ EFA T
Subjt:  SCYV-----NLFEFAYT

A0A6J1D347 transportin-3 isoform X22.0e-4894.34Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIF+RCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYVNL
        SC++++
Subjt:  SCYVNL

A0A6J1D496 transportin-3 isoform X12.0e-4894.34Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIF+RCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYVNL
        SC++++
Subjt:  SCYVNL

A0A6J1D4H9 transportin MOS14 isoform X32.0e-4894.34Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +ASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIF+RCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYVNL
        SC++++
Subjt:  SCYVNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12930.1 ARM repeat superfamily protein1.6e-3770.75Show/hide
Query:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL
        +A VI EE+ H+E++G LFITTFERFT A+S++ INSSYICDQEPDLVEAY NFAS  +R  HKE+L  SG+LLE+SF KAAICCTAMHRGAALAAMSYL
Subjt:  SASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVEAYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYL

Query:  SCYVNL
        S ++ +
Subjt:  SCYVNL

AT1G30470.1 SIT4 phosphatase-associated family protein1.8e-0947.54Show/hide
Query:  ASACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILILVISASV
        +S   EVH+NAA +LC ++R+AP GL  K+SS S  G L++H LEDS P S+L+  +S  +
Subjt:  ASACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILILVISASV

AT1G30470.2 SIT4 phosphatase-associated family protein1.8e-0947.54Show/hide
Query:  ASACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILILVISASV
        +S   EVH+NAA +LC ++R+AP GL  K+SS S  G L++H LEDS P S+L+  +S  +
Subjt:  ASACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILILVISASV

AT1G30470.3 SIT4 phosphatase-associated family protein1.8e-0947.54Show/hide
Query:  ASACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILILVISASV
        +S   EVH+NAA +LC ++R+AP GL  K+SS S  G L++H LEDS P S+L+  +S  +
Subjt:  ASACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILILVISASV

AT2G28360.1 SIT4 phosphatase-associated family protein5.4e-0650.94Show/hide
Query:  SACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILI
        S+  EV +NAA  LCAI+R AP  L  K+SS  FV  +  HA+EDSH  S L+
Subjt:  SACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGTTCAGCTTCAGCTTGTTCAGAAGTTCATTCTAATGCAGCCGGATTACTTTGTGCTATTTCTCGATTTGCTCCTCTTGGTCTTTTGGCTAAAATTTCCAGCAC
AAGTTTTGTAGGAAGTTTGGTTCGCCATGCCTTAGAAGATTCTCATCCAACGTCTATTTTAATACTCGTTATCAGTGCTTCAGTTATTGTTGAAGAATATGGCCATCAAG
AAAAATTTGGGCATTTGTTTATCACCACTTTTGAAAGGTTTACTTATGCAGCATCTGTAATTGCTATTAATTCCTCGTACATATGTGACCAAGAACCTGATCTAGTGGAG
GCTTACACAAATTTTGCTTCAATCTTTCTCCGATGCTCTCATAAGGAAATATTAGCTGCATCTGGTTCTCTTTTGGAGGTTTCATTTCAGAAGGCTGCTATATGTTGCAC
GGCTATGCATCGTGGGGCAGCGTTAGCAGCAATGTCATACCTTTCTTGTTATGTCAATTTGTTTGAGTTTGCATACACTTGTCTTCCATTCGTCGTCGTGGGTTTTGCGC
AGCTATTGCAGTGCCATCATACATCAGGGGCTTTGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGTTCAGCTTCAGCTTGTTCAGAAGTTCATTCTAATGCAGCCGGATTACTTTGTGCTATTTCTCGATTTGCTCCTCTTGGTCTTTTGGCTAAAATTTCCAGCAC
AAGTTTTGTAGGAAGTTTGGTTCGCCATGCCTTAGAAGATTCTCATCCAACGTCTATTTTAATACTCGTTATCAGTGCTTCAGTTATTGTTGAAGAATATGGCCATCAAG
AAAAATTTGGGCATTTGTTTATCACCACTTTTGAAAGGTTTACTTATGCAGCATCTGTAATTGCTATTAATTCCTCGTACATATGTGACCAAGAACCTGATCTAGTGGAG
GCTTACACAAATTTTGCTTCAATCTTTCTCCGATGCTCTCATAAGGAAATATTAGCTGCATCTGGTTCTCTTTTGGAGGTTTCATTTCAGAAGGCTGCTATATGTTGCAC
GGCTATGCATCGTGGGGCAGCGTTAGCAGCAATGTCATACCTTTCTTGTTATGTCAATTTGTTTGAGTTTGCATACACTTGTCTTCCATTCGTCGTCGTGGGTTTTGCGC
AGCTATTGCAGTGCCATCATACATCAGGGGCTTTGTCATAG
Protein sequenceShow/hide protein sequence
MGCSASACSEVHSNAAGLLCAISRFAPLGLLAKISSTSFVGSLVRHALEDSHPTSILILVISASVIVEEYGHQEKFGHLFITTFERFTYAASVIAINSSYICDQEPDLVE
AYTNFASIFLRCSHKEILAASGSLLEVSFQKAAICCTAMHRGAALAAMSYLSCYVNLFEFAYTCLPFVVVGFAQLLQCHHTSGALS