CuGenDBv2

Gene ID	Spg001616
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transportin-3 isoform X1
Genome location	scaffold10:175610..179840
RNA-Seq Expression	Spg001616
Synteny	Spg001616
Gene Ontology terms	NA
InterPro domains	IPR011989 - Armadillo-like helical IPR013598 - Exportin-1/Importin-beta-like IPR016024 - Armadillo-type fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK28316.1 transportin-3 isoform X1 [Cucumis melo var. makuwa]

4.3e-104

97.04

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHEVCVI
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQD ASFDLAIEVLVELVSRHEVCV 
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHEVCVI

Query:  LYK
         YK
Subjt:  LYK

XP_022148142.1 transportin-3 isoform X1 [Momordica charantia]

8.9e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

XP_022148144.1 transportin-3 isoform X2 [Momordica charantia]

8.9e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

XP_022148146.1 transportin MOS14 isoform X3 [Momordica charantia]

8.9e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

XP_022148147.1 transportin-3 isoform X4 [Momordica charantia]

8.9e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

TrEMBL top hits

e value

%identity

Alignment

A0A5D3DX38 Transportin-3 isoform X1

2.1e-104

97.04

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHEVCVI
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQD ASFDLAIEVLVELVSRHEVCV 
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHEVCVI

Query:  LYK
         YK
Subjt:  LYK

A0A6J1D347 transportin-3 isoform X2

4.3e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

A0A6J1D3A4 transportin-3 isoform X4

4.3e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

A0A6J1D496 transportin-3 isoform X1

4.3e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

A0A6J1D4H9 transportin MOS14 isoform X3

4.3e-102

97.96

Show/hide

Query:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS
        IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRT+EHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQN DCKISSS
Subjt:  IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSS

Query:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
        CRSQYARELLLHTPMVLEFLLQQSEK FDCGTQPQE+NRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE
Subjt:  CRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHE

SwissProt top hits

e value

%identity

Alignment

Q8GUL2 Transportin MOS14

1.5e-06

26.39

Show/hide

Query:  SLLSGTPSRLESLL---------IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNL-AV
        +LL  + S LE+L+         +Q +   L  G    L  +L    KKF  GPP++ TQI +A++AL +           +   L++   +    +   
Subjt:  SLLSGTPSRLESLL---------IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNL-AV

Query:  LEMLTVLPEEVVDSQNADCKISSSCRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQ
        LE+LTVLPEE     N         R Q+ +EL       L  L            +  E   ++L    SW+R+     IP   L  HPL++  L SL 
Subjt:  LEMLTVLPEEVVDSQNADCKISSSCRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQ

Query:  DAASFDLAIEVLVELV
             + ++ V+ EL+
Subjt:  DAASFDLAIEVLVELV

Arabidopsis top hits

e value

%identity

Alignment

AT1G12930.1 ARM repeat superfamily protein

4.3e-62

57.56

Show/hide

Query:  SSSLLPSPLSVMDWGIISL--LSGTPSRLESLLIQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQ
        S+SLL SP       I+SL  L    +++    IQNE   LQ   KDALLNALL+AAK++SSG PQLLTQICLALSAL+L +  + KP D+L ++LQNLQ
Subjt:  SSSLLPSPLSVMDWGIISL--LSGTPSRLESLLIQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQ

Query:  SVDNGNLAVLEMLTVLPEEVVDSQNADCKISSSCRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPL
        + D+GN+ +LE+LTVLPEE+ D+++       S  S   +ELL HT MVL+FLLQQSE +F     P + NRKILRCLLSWVR GCFSEIPQG++P+HPL
Subjt:  SVDNGNLAVLEMLTVLPEEVVDSQNADCKISSSCRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPL

Query:  LNFVLKSLQDAASFDLAIEVLVELVSRHEVC--VILYK
        LN+V  +LQ   +FDLAIEVLVELV+RHE    V+LYK
Subjt:  LNFVLKSLQDAASFDLAIEVLVELVSRHEVC--VILYK

AT5G62600.1 ARM repeat superfamily protein

1.0e-07

26.39

Show/hide

Query:  SLLSGTPSRLESLL---------IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNL-AV
        +LL  + S LE+L+         +Q +   L  G    L  +L    KKF  GPP++ TQI +A++AL +           +   L++   +    +   
Subjt:  SLLSGTPSRLESLL---------IQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALILRTIEHGKPIDRLFYSLQNLQSVDNGNL-AV

Query:  LEMLTVLPEEVVDSQNADCKISSSCRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQ
        LE+LTVLPEE     N         R Q+ +EL       L  L            +  E   ++L    SW+R+     IP   L  HPL++  L SL 
Subjt:  LEMLTVLPEEVVDSQNADCKISSSCRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSEIPQGSLPTHPLLNFVLKSLQ

Query:  DAASFDLAIEVLVELV
             + ++ V+ EL+
Subjt:  DAASFDLAIEVLVELV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGCCCTCTGGAACTTCCGCCCCTTTTGTCTTCTGTTTCTCATCTGACGGGATCATAGCAAGGGCCTTTGGGAATTCTTCACTTATCTCATCTAATTCCAGCTCCTT
GCTTCCTTCCCCTCTATCGGTCATGGATTGGGGAATTATCTCGTTACTCTCGGGGACACCATCCAGGCTAGAGTCTTTGTTGATCCAGAATGAAGGCTACCTTTTGCAAT
TAGGAGTAAAAGATGCTCTACTAAACGCTCTTCTTGTGGCTGCCAAAAAGTTTAGTTCAGGCCCTCCTCAGCTTTTAACTCAAATCTGTCTTGCACTCTCTGCGCTTATT
CTGAGAACAATAGAGCATGGGAAACCCATTGATCGTCTTTTCTACAGTCTTCAGAATCTGCAGAGTGTGGACAACGGCAATTTGGCTGTTCTGGAGATGCTTACTGTTTT
ACCTGAAGAAGTTGTTGACAGCCAAAATGCTGATTGTAAAATAAGTTCATCCTGTAGAAGCCAATATGCCCGAGAGCTTCTGTTGCACACTCCTATGGTTCTTGAGTTCT
TACTGCAGCAATCTGAGAAAAGATTTGATTGTGGGACACAGCCACAGGAAAAGAACAGAAAAATTCTTCGATGTTTGCTGAGTTGGGTACGTGTTGGGTGCTTCTCTGAG
ATACCTCAGGGTTCATTGCCAACGCATCCCCTTCTTAATTTTGTGCTCAAGTCCTTGCAAGATGCAGCTTCATTTGATTTGGCTATTGAAGTTCTTGTTGAGCTTGTGAG
TAGACATGAGGTATGCGTCATACTTTACAAGTGGTACGTTATTGAAATGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKPSGTSAPFVFCFSSDGIIARAFGNSSLISSNSSSLLPSPLSVMDWGIISLLSGTPSRLESLLIQNEGYLLQLGVKDALLNALLVAAKKFSSGPPQLLTQICLALSALI
LRTIEHGKPIDRLFYSLQNLQSVDNGNLAVLEMLTVLPEEVVDSQNADCKISSSCRSQYARELLLHTPMVLEFLLQQSEKRFDCGTQPQEKNRKILRCLLSWVRVGCFSE
IPQGSLPTHPLLNFVLKSLQDAASFDLAIEVLVELVSRHEVCVILYKWYVIEM

Spg001616 (gene) of Sponge gourd (cylindrica) v1 genome