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Spg001648 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001648
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:348960..350026
RNA-Seq ExpressionSpg001648
SyntenySpg001648
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.2e-1140Show/hide
Query:  RTNLNP-QLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSIS-SSSPPVRVETDSLQVARLLNDK
        R NLN   + W + PT+ WKL+ DASW+E+++ GG+GW+L     E+++AG   I+    ++ LE + I+ GLQ I+  S  P+ +E+DS++V RL+  +
Subjt:  RTNLNP-QLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSIS-SSSPPVRVETDSLQVARLLNDK

Query:  DRDET
        D D T
Subjt:  DRDET

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.2e-1333.33Show/hide
Query:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF
        W    ++ WKL+ +A+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI EGL++I      P+ +E+DSL+   LL+ + +D+T++   
Subjt:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF

Query:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE
        + E   +     I S+ H++   N VAH LA +A E++
Subjt:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]2.0e-0930.3Show/hide
Query:  PTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEA
        P + WKL+ DA+W+ ++  GGLGW++R    E+  AG + I     +++LE +AI  G+++ +SSSS  + +E++SL+   L+    ++ T++   V + 
Subjt:  PTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEA

Query:  KALTSSKNIESIAHVTGIHNVVAHNLAIKASE
        K       ++   HV    N VA  +A +A++
Subjt:  KALTSSKNIESIAHVTGIHNVVAHNLAIKASE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.4e-2039.24Show/hide
Query:  LNPQLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSISSSS--PPVRVETDSLQVARLLNDKDRD
        LN +L W   P  IW L+ DASW++    GG+GW++R WD ++++AG R+++    V  LE  AI+EGL+++++     P+ +ETDS +V  LLN K  D
Subjt:  LNPQLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSISSSS--PPVRVETDSLQVARLLNDKDRD

Query:  ETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV
         TK    V E   L  S  I + A V    N  AH+LA +AS    S  W   FP+W+
Subjt:  ETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.0e-1332.19Show/hide
Query:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI---------SSSSPPVRVETDSLQVARLLNDKDR
        W    ++ WKL+ DA+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI EGL++I              P+ +E+DSL+   LL+ + +
Subjt:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI---------SSSSPPVRVETDSLQVARLLNDKDR

Query:  DETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE
        D+T++   + E   +     I S+ H++   N VAH+LA +A E++
Subjt:  DETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.1e-1333.33Show/hide
Query:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF
        W    ++ WKL+ +A+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI EGL++I      P+ +E+DSL+   LL+ + +D+T++   
Subjt:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI-SSSSPPVRVETDSLQVARLLNDKDRDETKLRVF

Query:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE
        + E   +     I S+ H++   N VAH LA +A E++
Subjt:  VLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE

A0A6J1CQG0 uncharacterized protein LOC1110132165.9e-1240Show/hide
Query:  RTNLNP-QLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSIS-SSSPPVRVETDSLQVARLLNDK
        R NLN   + W + PT+ WKL+ DASW+E+++ GG+GW+L     E+++AG   I+    ++ LE + I+ GLQ I+  S  P+ +E+DS++V RL+  +
Subjt:  RTNLNP-QLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSIS-SSSPPVRVETDSLQVARLLNDK

Query:  DRDET
        D D T
Subjt:  DRDET

A0A6J1D5W1 uncharacterized protein LOC1110173299.5e-1030.3Show/hide
Query:  PTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEA
        P + WKL+ DA+W+ ++  GGLGW++R    E+  AG + I     +++LE +AI  G+++ +SSSS  + +E++SL+   L+    ++ T++   V + 
Subjt:  PTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQS-ISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEA

Query:  KALTSSKNIESIAHVTGIHNVVAHNLAIKASE
        K       ++   HV    N VA  +A +A++
Subjt:  KALTSSKNIESIAHVTGIHNVVAHNLAIKASE

A0A6J1DNV9 uncharacterized protein LOC1110224037.0e-2139.24Show/hide
Query:  LNPQLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSISSSS--PPVRVETDSLQVARLLNDKDRD
        LN +L W   P  IW L+ DASW++    GG+GW++R WD ++++AG R+++    V  LE  AI+EGL+++++     P+ +ETDS +V  LLN K  D
Subjt:  LNPQLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSISSSS--PPVRVETDSLQVARLLNDKDRD

Query:  ETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV
         TK    V E   L  S  I + A V    N  AH+LA +AS    S  W   FP+W+
Subjt:  ETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWV

A0A6J1DSV1 uncharacterized protein LOC1110236082.4e-1332.19Show/hide
Query:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI---------SSSSPPVRVETDSLQVARLLNDKDR
        W    ++ WKL+ DA+W  D   GG+GW+LR    E++ A  R I+    +++LE +AI EGL++I              P+ +E+DSL+   LL+ + +
Subjt:  WLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRVSWLETIAIMEGLQSI---------SSSSPPVRVETDSLQVARLLNDKDR

Query:  DETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE
        D+T++   + E   +     I S+ H++   N VAH+LA +A E++
Subjt:  DETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGCCGGGACTCAACTCACCCGCCTTATCGTCATCCCTGACCCTGTGGCGGATTCTGGATTTAATTTGATGGAGTGCAAGATTGGATTTGGGTTGGAATCGTATTG
CGTCAACCCGACAGTGACCATTCCTGCAGCGGCGGCTTCAAGGACGAACTTGAACCCCCAGCTTCTATGGTTGTCGATCCCTACCAGCATATGGAAGCTTAGCTGCGACG
CGTCCTGGAACGAGGATAAGCAATGTGGCGGACTTGGATGGGTCCTTCGACGTTGGGACGAAGAACTCATGGTCGCTGGGTACCGGTACATCAAGCGTCCATGGCGAGTC
AGCTGGCTTGAAACGATTGCAATAATGGAAGGCCTTCAATCGATTTCGTCATCTTCCCCACCGGTGCGTGTTGAAACGGATTCTCTACAAGTGGCGCGGCTACTCAATGA
CAAAGACAGGGATGAAACAAAGTTGAGGGTGTTTGTTTTGGAAGCAAAAGCCCTAACCTCTTCTAAGAATATTGAATCTATAGCTCATGTGACTGGAATTCATAACGTTG
TGGCCCACAACTTGGCTATAAAGGCTAGTGAAAGTGAAGCATCACATAGTTGGTTTGGAAATTTTCCATCTTGGGTTCACCCTCCTAATGAGGTGGATATTGGACATGTA
AATCATGCCTATGGGGTTCCTGTCCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCGCCGGGACTCAACTCACCCGCCTTATCGTCATCCCTGACCCTGTGGCGGATTCTGGATTTAATTTGATGGAGTGCAAGATTGGATTTGGGTTGGAATCGTATTG
CGTCAACCCGACAGTGACCATTCCTGCAGCGGCGGCTTCAAGGACGAACTTGAACCCCCAGCTTCTATGGTTGTCGATCCCTACCAGCATATGGAAGCTTAGCTGCGACG
CGTCCTGGAACGAGGATAAGCAATGTGGCGGACTTGGATGGGTCCTTCGACGTTGGGACGAAGAACTCATGGTCGCTGGGTACCGGTACATCAAGCGTCCATGGCGAGTC
AGCTGGCTTGAAACGATTGCAATAATGGAAGGCCTTCAATCGATTTCGTCATCTTCCCCACCGGTGCGTGTTGAAACGGATTCTCTACAAGTGGCGCGGCTACTCAATGA
CAAAGACAGGGATGAAACAAAGTTGAGGGTGTTTGTTTTGGAAGCAAAAGCCCTAACCTCTTCTAAGAATATTGAATCTATAGCTCATGTGACTGGAATTCATAACGTTG
TGGCCCACAACTTGGCTATAAAGGCTAGTGAAAGTGAAGCATCACATAGTTGGTTTGGAAATTTTCCATCTTGGGTTCACCCTCCTAATGAGGTGGATATTGGACATGTA
AATCATGCCTATGGGGTTCCTGTCCCATAG
Protein sequenceShow/hide protein sequence
MGAGTQLTRLIVIPDPVADSGFNLMECKIGFGLESYCVNPTVTIPAAAASRTNLNPQLLWLSIPTSIWKLSCDASWNEDKQCGGLGWVLRRWDEELMVAGYRYIKRPWRV
SWLETIAIMEGLQSISSSSPPVRVETDSLQVARLLNDKDRDETKLRVFVLEAKALTSSKNIESIAHVTGIHNVVAHNLAIKASESEASHSWFGNFPSWVHPPNEVDIGHV
NHAYGVPVP