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Spg001650 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001650
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationscaffold8:34045213..34051772
RNA-Seq ExpressionSpg001650
SyntenySpg001650
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039125.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.6e-1050Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG NY  WSQKLLIFF+QL+VDY+LTTD +      ++D   +     DP S+ GPP      + V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
KAA0041001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.2e-1158.67Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADE
        VLP LSKL+PL+G+NYHCW QKLLIFFKQLEVDYILTTD      A    L        DP S+ G P A  AD+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADE
KAA0044943.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.2e-1052.56Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG+NY  WSQKLLIFF+QLEVDY+LTTD         +D + +     DP S+ GP  A    E V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
KAA0066784.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-1052.56Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG+NY  WSQKLLIFFKQLEVDY+LTTD         +D   +     DP S+ GP  A    + V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
TYK27931.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-1052.56Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG+NY  WSQKLLIFFKQLEVDY+LTTD         +D   +     DP S+ GP  A    + V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
TrEMBL top hitse value%identityAlignment
A0A5A7TN53 Ty1-copia retrotransposon protein5.9e-1152.56Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG+NY  WSQKLLIFF+QLEVDY+LTTD         +D + +     DP S+ GP  A    E V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
A0A5D3D262 Ty1-copia retrotransposon protein1.0e-1050Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG+NY  WSQKLLIFF+QL+VDY+LTTD        ++D   +     DP S+ GPP      + V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
A0A5D3D9V0 Ty1-copia retrotransposon protein2.0e-1158.67Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADE
        VLP LSKL+PL+G+NYHCW QKLLIFFKQLEVDYILTTD      A    L        DP S+ G P A  AD+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADE
A0A5D3DTW3 Ty1-copia retrotransposon protein7.7e-1150Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG NY  WSQKLLIFF+QL+VDY+LTTD +      ++D   +     DP S+ GPP      + V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
A0A5D3DXF0 Ty1-copia retrotransposon protein1.0e-1051.28Show/hide
Query:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
        +LP LSKLEPLDG+NYH WSQKLLIFF+QLEVDYIL+TD        ++D   +     DP S+ GP       + V+
Subjt:  VLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGACCGACCGTTCCGCATGTCGTTCATTGACCGCCCATTTCGCACGCGTGGACTGCTCCGATGGTGACACGTGGCAGCTGTTCATGGTGCTTCCATATCTGTCCAA
GCTAGAACCTTTGGATGGTTCTAACTACCATTGTTGGTCTCAGAAACTGCTCATTTTCTTCAAACAACTGGAGGTCGACTACATTCTCACCACCGATTATACGGAGAAAT
CAGTAGCACTTGCCACTGATCTGGAAAAATCTAAGGAGGTCCAACCTGATCCACATAGCAATTTTGGACCACCCGACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAA
ATAGGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAGGGCCGGGCCAACTTGGCCCGACCCATATGGTCGGCCTCGGCCCAAGGCTGAGGTCGACCATTCGGCCCG
CTTGCGTGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTAATGCTTCTAGCCGCCCCGGTTTCGTCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAG
CACGAGCAGAGTTTAGTACATTTGCTTCTTCAGTTAGAATCGAAGAGAACCAAAAGGAGAAACCATTTTCCATCCAAAACGCCTCATCTCCGACGACAAAAGGAAGAAGG
CTACCAAAACAACACCCAAAATCACCATGGGATACTATTGCTCGCGCTAGATTGTGCTCCAAGGAGTTTCTGGTTCTAGCACATTTAGAGAAATTAGATGCTACTCCACG
GGTTTTCGATCAGCCTAGCGATCTCGAACACGATCAGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGACCGACCGTTCCGCATGTCGTTCATTGACCGCCCATTTCGCACGCGTGGACTGCTCCGATGGTGACACGTGGCAGCTGTTCATGGTGCTTCCATATCTGTCCAA
GCTAGAACCTTTGGATGGTTCTAACTACCATTGTTGGTCTCAGAAACTGCTCATTTTCTTCAAACAACTGGAGGTCGACTACATTCTCACCACCGATTATACGGAGAAAT
CAGTAGCACTTGCCACTGATCTGGAAAAATCTAAGGAGGTCCAACCTGATCCACATAGCAATTTTGGACCACCCGACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAA
ATAGGGCTGGGAGACCGACCCAGAGGAAGAACCGACCAAAGGGCCGGGCCAACTTGGCCCGACCCATATGGTCGGCCTCGGCCCAAGGCTGAGGTCGACCATTCGGCCCG
CTTGCGTGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTAATGCTTCTAGCCGCCCCGGTTTCGTCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAG
CACGAGCAGAGTTTAGTACATTTGCTTCTTCAGTTAGAATCGAAGAGAACCAAAAGGAGAAACCATTTTCCATCCAAAACGCCTCATCTCCGACGACAAAAGGAAGAAGG
CTACCAAAACAACACCCAAAATCACCATGGGATACTATTGCTCGCGCTAGATTGTGCTCCAAGGAGTTTCTGGTTCTAGCACATTTAGAGAAATTAGATGCTACTCCACG
GGTTTTCGATCAGCCTAGCGATCTCGAACACGATCAGGGATAG
Protein sequenceShow/hide protein sequence
MLTDRSACRSLTAHFARVDCSDGDTWQLFMVLPYLSKLEPLDGSNYHCWSQKLLIFFKQLEVDYILTTDYTEKSVALATDLEKSKEVQPDPHSNFGPPDAQGADEDVRAK
IGLGDRPRGRTDQRAGPTWPDPYGRPRPKAEVDHSARLRGPSSVTSSRSLMLLAAPVSSGLSRNASEFLKTLGARAEFSTFASSVRIEENQKEKPFSIQNASSPTTKGRR
LPKQHPKSPWDTIARARLCSKEFLVLAHLEKLDATPRVFDQPSDLEHDQG