CuGenDBv2

Gene ID	Spg001673
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	nuclear pore complex protein GP210 isoform X2
Genome location	scaffold10:2328404..2330484
RNA-Seq Expression	Spg001673
Synteny	Spg001673
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581051.1 Nuclear pore complex protein 210, partial [Cucurbita argyrosperma subsp. sororia]

5.5e-58

89.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

KAG7017783.1 Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.5e-58

89.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

XP_022934340.1 nuclear pore complex protein GP210 isoform X1 [Cucurbita moschata]

5.5e-58

89.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

XP_022934341.1 nuclear pore complex protein GP210 isoform X2 [Cucurbita moschata]

5.5e-58

89.6

Show/hide

Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

XP_023528997.1 LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. pepo]

5.5e-58

89.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E5N1 nuclear pore complex protein GP210 isoform X2

2.8e-55

85.37

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Query:  KVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISV
        +V QIRLTN+EFPFHVINLAV T+LR+PI+Y+DSLGN+FHEA DVVL YVETNYPDIVSVNYS E NGYIYLKAR+HGRALVQV+IDKNPEKSDYILISV
Subjt:  KVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISV

Query:  GALIHPQDPVMHVGSHINFGIKG
        GALIHPQDPV+HVGSH+NF IKG
Subjt:  GALIHPQDPVMHVGSHINFGIKG

A0A6J1F1J2 nuclear pore complex protein GP210 isoform X2

2.7e-58

89.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

A0A6J1F7E5 nuclear pore complex protein GP210 isoform X1

2.7e-58

89.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

A0A6J1J4U8 nuclear pore complex protein GP210 isoform X2

1.3e-57

88.8

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNY REGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

A0A6J1J529 nuclear pore complex protein GP210 isoform X1

1.3e-57

88.8

Show/hide

Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIRLTN+EFPFHVINLAV T+LRLPISYYDSLGNLFHEA DVVL YVETNYPDIVSVNY REGNGYIYLKARQHGRALVQV+IDKNPEKSDYILI
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGALIHPQDPV+ VGSH+NF IKG
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

SwissProt top hits

e value

%identity

Alignment

F4KHD8 Nuclear pore complex protein GP210

4.7e-28

49.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIR+ ++  PFHVI+LAVG +L LPI+YYD+LG  F EA  V    VETN+ D+V +    +     Y+K  +HG+AL++V+I  N  KSDY+L+
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGA I PQ+PV+H G+ +NF I G
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

Arabidopsis top hits

e value

%identity

Alignment

AT5G40480.1 embryo defective 3012

3.3e-29

49.6

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Query:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI
        + +VAQIR+ ++  PFHVI+LAVG +L LPI+YYD+LG  F EA  V    VETN+ D+V +    +     Y+K  +HG+AL++V+I  N  KSDY+L+
Subjt:  MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILI

Query:  SVGALIHPQDPVMHVGSHINFGIKG
        SVGA I PQ+PV+H G+ +NF I G
Subjt:  SVGALIHPQDPVMHVGSHINFGIKG

Sequences

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CDS sequence

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ATGGGGAAGGTCGCCCAGATAAGACTAACAAATAAGGAATTTCCTTTCCATGTGATTAATCTTGCCGTCGGTACCAAACTTCGCCTTCCAATAAGCTACTATGATTCTCT
AGGCAATCTCTTTCATGAGGCTCGTGATGTTGTTCTCCTTTATGTGGAAACTAACTATCCAGATATTGTTTCCGTTAATTACTCAAGAGAAGGCAATGGATATATTTATT
TGAAGGCAAGGCAACATGGTAGAGCTCTAGTCCAAGTAACGATTGACAAGAATCCAGAAAAGTCAGACTATATATTGATTTCAGTTGGTGCGCTAATACATCCTCAAGAC
CCAGTAATGCATGTCGGTAGTCATATCAACTTCGGTATAAAAGGTCAGTATCATGTGAGAATTGAATTGAGAACATCAGATTTTCTTCTTGATAAACTGCAAGTATAA

mRNA sequence

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Protein sequence

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MGKVAQIRLTNKEFPFHVINLAVGTKLRLPISYYDSLGNLFHEARDVVLLYVETNYPDIVSVNYSREGNGYIYLKARQHGRALVQVTIDKNPEKSDYILISVGALIHPQD
PVMHVGSHINFGIKGQYHVRIELRTSDFLLDKLQV

Spg001673 (gene) of Sponge gourd (cylindrica) v1 genome