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Spg001697 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001697
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold10:2539942..2544315
RNA-Seq ExpressionSpg001697
SyntenySpg001697
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-1442.04Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF
        Y   EEVDNS   +QRTSVFDRIKP TTR S +  + L + + EE              F+ +                        +QR+M +L+VK F
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF

Query:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         E N D K+HS + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1339.33Show/hide
Query:  EMLNETFSKTFHKKKKENFATSYYIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV----------------
        E+L  T   T    K +N   SY    EEVDNS   +QRTSVFDRIKP TTR S +   ++     E             F+ +                
Subjt:  EMLNETFSKTFHKKKKENFATSYYIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV----------------

Query:  --------RQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
                +QR+M +L+ K F E N D K+HS + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  --------RQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1340.76Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF
        Y   EEVDNS   +QRTSVFDRIKP TTR S +  + L + + EE              F+ +                        +QR+M +L+ K F
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF

Query:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         E N D K+H+ + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1340.65Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV------------------------RQRKMDNLEVKLFDE
        Y   EEVDNS   +Q+TSVFDRIKP TTR S +   ++     E             F+ +                        +QR+M +L+ K F E
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV------------------------RQRKMDNLEVKLFDE

Query:  VNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         N D K+HS + SRMKRK SV IN EGSL VKP  II  N INEG +Q  +E+KS
Subjt:  VNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1340.76Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF
        Y   EEVDNS   +QRTSVFDRIKP TTR S +  + L + + EE              F+ +                        +QR+M +L+ K F
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF

Query:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         E N D K+H+ + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein2.6e-1442.04Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF
        Y   EEVDNS   +QRTSVFDRIKP TTR S +  + L + + EE              F+ +                        +QR+M +L+VK F
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF

Query:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         E N D K+HS + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

A0A5A7TQ06 Retrotransposon gag protein1.3e-1339.33Show/hide
Query:  EMLNETFSKTFHKKKKENFATSYYIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV----------------
        E+L  T   T    K +N   SY    EEVDNS   +QRTSVFDRIKP TTR S +   ++     E             F+ +                
Subjt:  EMLNETFSKTFHKKKKENFATSYYIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV----------------

Query:  --------RQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
                +QR+M +L+ K F E N D K+HS + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  --------RQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

A0A5A7UI09 Retrotransposon gag protein1.3e-1340.76Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF
        Y   EEVDNS   +QRTSVFDRIKP TTR S +  + L + + EE              F+ +                        +QR+M +L+ K F
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF

Query:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         E N D K+H+ + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

A0A5A7VRG7 Retrotransposon gag protein5.8e-1440.65Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV------------------------RQRKMDNLEVKLFDE
        Y   EEVDNS   +Q+TSVFDRIKP TTR S +   ++     E             F+ +                        +QR+M +L+ K F E
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE------------FRVV------------------------RQRKMDNLEVKLFDE

Query:  VNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         N D K+HS + SRMKRK SV IN EGSL VKP  II  N INEG +Q  +E+KS
Subjt:  VNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

A0A5D3CCI8 Retrotransposon gag protein1.3e-1340.76Show/hide
Query:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF
        Y   EEVDNS   +QRTSVFDRIKP TTR S +  + L + + EE              F+ +                        +QR+M +L+ K F
Subjt:  YIDIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEE--------------FRVV------------------------RQRKMDNLEVKLF

Query:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS
         E N D K+H+ + SRMKRK SV IN EGSL VKP  II  N INEG ++  +E+KS
Subjt:  DEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQNHNEDKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTGCCCATTGTTGCTCCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGTAGGCGAAGAAACAACATTGCGGGGAGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTATGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGGATGGTTGAGATGCAAGAGCACA
TCAACACCTTGGTGAAGGTAAAACCTCAACAACTGGAGATGTTGAATGAAACCTTCTCCAAAACTTTCCACAAAAAGAAAAAAGAAAACTTTGCAACTTCCTACTACATC
GACATAGAAGAAGTTGACAACTCTGAGAATGGTGAACAGAGAACTTCTGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGAGTTATAGTGGGGAAGCCCTTGT
GGTGGTGTCCGTTGAAGAATTCAGAGTCGTCAGACAGAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAACTTCATAGTAGCATCC
TGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATATAGAAGGTTCCTTGAAGGTGAAGCCAACTCTCATTATCTTGATCAATTCTATAAATGAAGGATCTGATCAA
AACCATAATGAAGATAAGAGCTTTTTGAAAGATTGGAATTCCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGA
GTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAGTAGGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTGCCCATTGTTGCTCCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGTAGGCGAAGAAACAACATTGCGGGGAGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTATGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGGATGGTTGAGATGCAAGAGCACA
TCAACACCTTGGTGAAGGTAAAACCTCAACAACTGGAGATGTTGAATGAAACCTTCTCCAAAACTTTCCACAAAAAGAAAAAAGAAAACTTTGCAACTTCCTACTACATC
GACATAGAAGAAGTTGACAACTCTGAGAATGGTGAACAGAGAACTTCTGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGAGTTATAGTGGGGAAGCCCTTGT
GGTGGTGTCCGTTGAAGAATTCAGAGTCGTCAGACAGAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAACTTCATAGTAGCATCC
TGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATATAGAAGGTTCCTTGAAGGTGAAGCCAACTCTCATTATCTTGATCAATTCTATAAATGAAGGATCTGATCAA
AACCATAATGAAGATAAGAGCTTTTTGAAAGATTGGAATTCCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTGGTGGGA
GTCTAGAGGAAGCCTTGAGGGGAATTCTCTGAGAGTAGGAGAATGA
Protein sequenceShow/hide protein sequence
MGSTAHCCSNELRLQEDKASIIVGEETTLRGAYTNDKFLVKYNPLFEPDYDVVTVMMTETRTMEERMVEMQEHINTLVKVKPQQLEMLNETFSKTFHKKKKENFATSYYI
DIEEVDNSENGEQRTSVFDRIKPSTTRPSSYSGEALVVVSVEEFRVVRQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSLKVKPTLIILINSINEGSDQ
NHNEDKSFLKDWNSCEHHHYGYTGMTLRLLEAGDWWESRGSLEGNSLRVGE