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Spg001718 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001718
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:3374228..3379318
RNA-Seq ExpressionSpg001718
SyntenySpg001718
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-2364.65Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER
        MS+   LGK Q +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G PIQEL+ RV+ LE      +  N+ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER

KAA0041962.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-2363.92Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER
        MS+V   GK Q +RLVE+EEQMLYL EVPDS+ FLES LEEIA +TD IDA+AGRV+G+PIQ+L+ RV+ LE    +  + ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER

KAA0046219.1 uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa]2.6e-2364.95Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER
        M +    GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+PIQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER

TYK18977.1 uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa]8.9e-2465.98Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER
        M +V   GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+PIQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]9.9e-2360.61Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEERNG
        MSA KQL K+ V+RLVEIEEQ+LYLREVPDS+R LE+R++E + +  +IDAV  RVDG+PIQ++ MRVE  E++A +P +FERGDSST    Q+E R G
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEERNG

TrEMBL top hitse value%identityAlignment
A0A5A7T3M3 Reverse transcriptase4.8e-2364.65Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER
        MS+   LGK Q +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G PIQEL+ RV+ LE      +  N+ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER

A0A5A7TEV3 Reverse transcriptase9.6e-2463.92Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER
        MS+V   GK Q +RLVE+EEQMLYL EVPDS+ FLES LEEIA +TD IDA+AGRV+G+PIQ+L+ RV+ LE    +  + ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER

A0A5A7TY91 Retrotrans_gag domain-containing protein1.3e-2364.95Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER
        M +    GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+PIQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER

A0A5D3BYE6 Reverse transcriptase4.8e-2364.65Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER
        MS+   LGK Q +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVAGRV+G PIQEL+ RV+ LE      +  N+ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLEN--RAAKPSNFERGDSSTGSAAQMEER

A0A5D3D5Z0 Retrotrans_gag domain-containing protein4.3e-2465.98Show/hide
Query:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER
        M +V   GK Q +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVAGRV+G+PIQEL+ RV+ LE    +  + ERGDSSTGS A +EER
Subjt:  MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCAGTAAAACAGTTGGGCAAGACCCAAGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCTGATTCGGTTCGCTTCCTAGAATC
TCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACA
GAGCTGCGAAACCTAGTAACTTCGAGCGTGGGGACAGCTCGACGGGCTCTGCTGCCCAAATGGAGGAGCGTAACGGGGGTAGAGGTTGCGATATTCGCCCGTTGTGCCAC
CGGCGATCCGTTTTCAAGTTGGCTGACTTACTTGTGAGCGAAAGTAAGTGCCGCACAGTCGCTTTACGAGACCCTAAAGACCGCGACTGTGACACTCGGCCTCGGGCAAT
GGCTGAGGCCGATGCCATGGTCGCCCTCGGCCCACTTGCGTGGCCCAAGTTCCTCCGCCTCTGTTTGGTCTCTATTGTCCCTGGTCGTCCCGGTTCCACCTGGCCACGTC
TTTCCCTTAATACAAATTCACTGCTGGTGTCACGTGAAGGTCAGATAAGGTGGGCCCACGATCTTACGTGGCGTTTTCAAATTCATTGGATCGAATCTTCTAAAAGGCCG
AAGGTATGGCCTCATGGAGTGCCCATCCAGGCACCGGGGCCTGTTGCTTTAGCTCTTCGGCCTGAGCCTCAAAAAGGTTCATTTGCCGTTCCACCCCCCGATACTCCTTG
GAAGACATTAGCCGGCGAAAGGCCTCCCTTTCCTGTTCACTCGATGGATGCGGCCTACTTTGCGAATAAGGCAAACGACGTGATCCTAGATCGTTCATGTAAAGACATGC
GAGGTTATCCTTTGATCTGCATACGTGAGAGTGGTCGTAAAATTCCGTTCAATAAACCTCCCATTTTGGGGATAACACTAGATGAATGGCTGGGGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCAGTAAAACAGTTGGGCAAGACCCAAGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGAGGGAAGTCCCTGATTCGGTTCGCTTCCTAGAATC
TCGTCTTGAAGAGATTGCGACGAGGACAGATAAGATCGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACA
GAGCTGCGAAACCTAGTAACTTCGAGCGTGGGGACAGCTCGACGGGCTCTGCTGCCCAAATGGAGGAGCGTAACGGGGGTAGAGGTTGCGATATTCGCCCGTTGTGCCAC
CGGCGATCCGTTTTCAAGTTGGCTGACTTACTTGTGAGCGAAAGTAAGTGCCGCACAGTCGCTTTACGAGACCCTAAAGACCGCGACTGTGACACTCGGCCTCGGGCAAT
GGCTGAGGCCGATGCCATGGTCGCCCTCGGCCCACTTGCGTGGCCCAAGTTCCTCCGCCTCTGTTTGGTCTCTATTGTCCCTGGTCGTCCCGGTTCCACCTGGCCACGTC
TTTCCCTTAATACAAATTCACTGCTGGTGTCACGTGAAGGTCAGATAAGGTGGGCCCACGATCTTACGTGGCGTTTTCAAATTCATTGGATCGAATCTTCTAAAAGGCCG
AAGGTATGGCCTCATGGAGTGCCCATCCAGGCACCGGGGCCTGTTGCTTTAGCTCTTCGGCCTGAGCCTCAAAAAGGTTCATTTGCCGTTCCACCCCCCGATACTCCTTG
GAAGACATTAGCCGGCGAAAGGCCTCCCTTTCCTGTTCACTCGATGGATGCGGCCTACTTTGCGAATAAGGCAAACGACGTGATCCTAGATCGTTCATGTAAAGACATGC
GAGGTTATCCTTTGATCTGCATACGTGAGAGTGGTCGTAAAATTCCGTTCAATAAACCTCCCATTTTGGGGATAACACTAGATGAATGGCTGGGGACATAG
Protein sequenceShow/hide protein sequence
MSAVKQLGKTQVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDKIDAVAGRVDGMPIQELIMRVENLENRAAKPSNFERGDSSTGSAAQMEERNGGRGCDIRPLCH
RRSVFKLADLLVSESKCRTVALRDPKDRDCDTRPRAMAEADAMVALGPLAWPKFLRLCLVSIVPGRPGSTWPRLSLNTNSLLVSREGQIRWAHDLTWRFQIHWIESSKRP
KVWPHGVPIQAPGPVALALRPEPQKGSFAVPPPDTPWKTLAGERPPFPVHSMDAAYFANKANDVILDRSCKDMRGYPLICIRESGRKIPFNKPPILGITLDEWLGT