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Spg001735 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001735
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S5
Genome locationscaffold8:33198648..33202202
RNA-Seq ExpressionSpg001735
SyntenySpg001735
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004386 - helicase activity (molecular function)
InterPro domainsIPR000851 - Ribosomal protein S5
IPR005324 - Ribosomal protein S5, C-terminal
IPR014721 - Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 - Ribosomal protein S5 domain 2-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571211.1 hypothetical protein SDJN03_30126, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5199.07Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHAVQT YKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

KAG7011014.1 rpsE, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-5278.57Show/hide
Query:  LIALSKLKSIAEVLDAESSRMKLNFRRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV
        L+A      I     A+   + +  ++    C  AYEKCFQNLHYVERHEEHTIAHAVQT YKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV
Subjt:  LIALSKLKSIAEVLDAESSRMKLNFRRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV

Query:  VGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL
        VGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  VGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL

XP_022148602.1 uncharacterized protein LOC111017222 [Momordica charantia]1.4e-5199.07Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPAST TGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

XP_022947619.1 uncharacterized protein LOC111451428 [Cucurbita moschata]1.8e-5197.2Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHA+QT YKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKN+KSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

XP_023512942.1 uncharacterized protein LOC111777531 [Cucurbita pepo subsp. pepo]1.1e-5199.07Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHAVQT YKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

TrEMBL top hitse value%identityAlignment
A0A6J1D5I3 uncharacterized protein LOC1110172226.6e-5299.07Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPAST TGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

A0A6J1FXC7 DEAD-box ATP-dependent RNA helicase 421.5e-5198.13Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHAVQT YKKTKVYLWPAST+TGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

A0A6J1G7C4 uncharacterized protein LOC1114514288.7e-5297.2Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHA+QT YKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKN+KSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

A0A6J1J864 uncharacterized protein LOC1114843331.9e-5198.13Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHAVQT YKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHN LKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

A0A6J1KZ96 uncharacterized protein LOC1114996083.3e-5196.26Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHA+QT YKKTKVYLWPA TTTGMKAGKTVQTVLNLAGFKN+KSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

SwissProt top hitse value%identityAlignment
A5VXR4 30S ribosomal protein S51.9e-1138.74Show/hide
Query:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD
        R V +   KA E   +N+  V+  +  T+ +A + A+  +KVY+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP N + A FK L A+++P+ 
Subjt:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD

Query:  IQEKFGRTVVE
        I  K G++V E
Subjt:  IQEKFGRTVVE

C3K2V9 30S ribosomal protein S56.5e-1239.64Show/hide
Query:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD
        R V +   KA E   +N+  V+ +   T+ +A+++A+  +KVY+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP N + A FK L A+++P+ 
Subjt:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD

Query:  IQEKFGRTVVE
        I  K G TV E
Subjt:  IQEKFGRTVVE

Q1IFU9 30S ribosomal protein S55.0e-1239.64Show/hide
Query:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD
        R V +   KA E   +N+  V+  +  T+ +A + A+  +KVY+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP N + A FK L A+++P+ 
Subjt:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD

Query:  IQEKFGRTVVE
        I  K G+TV E
Subjt:  IQEKFGRTVVE

Q493J1 30S ribosomal protein S52.9e-1236.04Show/hide
Query:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD
        R V S   K+ EK  +N+  +  + + T+ HAV+  Y  +++Y+ PAS  TG+ AG T++ +L + G  NV +K  GS NP N ++A   AL ++++P+ 
Subjt:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD

Query:  IQEKFGRTVVE
        I EK G+++ E
Subjt:  IQEKFGRTVVE

Q4K550 30S ribosomal protein S56.5e-1238.74Show/hide
Query:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD
        R V +   KA E   +N+  V+ +   T+ +A+++A+  +KVY+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP N + A FK L A+++P+ 
Subjt:  RRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKD

Query:  IQEKFGRTVVE
        I  K G++V E
Subjt:  IQEKFGRTVVE

Arabidopsis top hitse value%identityAlignment
AT1G64880.1 Ribosomal protein S5 family protein6.8e-4983.18Show/hide
Query:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT
        KAYEKCFQNLHYVERHEEHTIAHA+QT+YKKTK+YLWPA TTTGMKAG+ V+T+L LAGFKN+KSKV+GSRN +NT+KA+ KALNA+ETPKD+QEKFGRT
Subjt:  KAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

AT2G33800.1 Ribosomal protein S5 family protein5.5e-0632.97Show/hide
Query:  QNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFG
        +N+  V   +  T  H  +  Y   KV L PAS  TG+ AG  V+ VL +AG +N   K +GS N  N  +A   A+  +   +D+ ++ G
Subjt:  QNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVVGSRNPHNTLKALFKALNAIETPKDIQEKFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTGGCATTTTCCAGTAGAGATCAACTACCTCTGATTGCTCTTTCTAAGCTGAAGAGCATAGCTGAAGTTTTGGATGCGGAAAGCAGTCGAATGAAATTGAATTT
TAGAAGAGTGGCATCCAAATGTTGTAAAGCATATGAGAAGTGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAGCACACAATTGCACATGCAGTACAGACGGCAT
ACAAAAAAACAAAGGTATATCTTTGGCCAGCATCAACTACCACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATGTTAAATCC
AAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAATCGAAACTCCGAAGGATATCCAAGAAAAGTTCGGGCGGACTGTTGT
TGAGAAGTATTTGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTGGCATTTTCCAGTAGAGATCAACTACCTCTGATTGCTCTTTCTAAGCTGAAGAGCATAGCTGAAGTTTTGGATGCGGAAAGCAGTCGAATGAAATTGAATTT
TAGAAGAGTGGCATCCAAATGTTGTAAAGCATATGAGAAGTGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAGCACACAATTGCACATGCAGTACAGACGGCAT
ACAAAAAAACAAAGGTATATCTTTGGCCAGCATCAACTACCACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCTGGTTTTAAAAATGTTAAATCC
AAGGTTGTTGGCTCAAGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAATCGAAACTCCGAAGGATATCCAAGAAAAGTTCGGGCGGACTGTTGT
TGAGAAGTATTTGCTATGA
Protein sequenceShow/hide protein sequence
MALAFSSRDQLPLIALSKLKSIAEVLDAESSRMKLNFRRVASKCCKAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKVYLWPASTTTGMKAGKTVQTVLNLAGFKNVKS
KVVGSRNPHNTLKALFKALNAIETPKDIQEKFGRTVVEKYLL