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Spg001745 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001745
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:2599577..2601987
RNA-Seq ExpressionSpg001745
SyntenySpg001745
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035913.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2672.94Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
        +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L VVLRLYE L+K+PVP+T +C D RWK FE
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
KAA0054337.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-2772.41Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
        +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLRLYE L+K+PVP+T +C D RWK FEVG
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
KAA0056315.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-2772.41Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
        +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLRLYE L+K+PVP+T +C D RWK FEVG
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
TYK08389.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.3e-2972.94Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
        +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LRL++ LLKKP P+T SC D RWKWFE
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]8.3e-2972.94Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
        +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LRL++ LLKKP P+T SC D RWKWFE
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
TrEMBL top hitse value%identityAlignment
A0A1S3B4J8 uncharacterized protein LOC1034859524.0e-2972.94Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
        +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LRL++ LLKKP P+T SC D RWKWFE
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
A0A5A7U0J9 Putative nuclease HARBI14.0e-2972.94Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
        +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LRL++ LLKKP P+T SC D RWKWFE
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
A0A5A7UID8 Retrotransposon protein1.7e-2772.41Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
        +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLRLYE L+K+PVP+T +C D RWK FEVG
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
A0A5A7URS0 Retrotransposon protein1.3e-2772.41Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
        +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLRLYE L+K+PVP+T +C D RWK FEVG
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVG
A0A5D3CDG6 Putative nuclease HARBI14.0e-2972.94Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
        +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LRL++ LLKKP P+T SC D RWKWFE
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFE
SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H2.4e-0758.14Show/hide
Query:  KPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEA
        KP FYVV VGR  GIY++W +C +QV  F GAV+KS+ T +EA
Subjt:  KPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEA
Q9KEI9 Ribonuclease H2.4e-0756Show/hide
Query:  MGKPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEAEYAFR
        M K K+YVV+ GR  GIYTSW  C  QV  + GA  KSY +  EAE AFR
Subjt:  MGKPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEAEYAFR
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.2e-0637.7Show/hide
Query:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRL
        +L+T   L  T  + +E  +A+FL I+ H+++ R ++  F  SGET+SRHFN  L+ V+ +
Subjt:  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGGAAGCCGAAATTCTATGTCGTGTTTGTTGGGCGTAACCTAGGAATTTACACTTCCTGGGTTGAATGCCACAAACAAGTAAACCAGTTTAGGGGAGCAGTACA
CAAGTCGTATGCAACATGTGCAGAAGCAGAGTATGCATTTAGGCATTTCGTAATGGGGACCAGTGGTCGAGCGAACCTCATGGATGAACATGAAGCGTGTCGTAACCGAC
CCGTAAGGGCAAATGGTCAAAATGTGGGAAAATGTTATTGTCTGAGTAGGATGTTCGTAGGTATGCTTAGGACGAATTTCGGTTTGGTAGGGACGAAAATCGTAGACGTT
GAAGAGATGGTTGCGATGTTCTTACACATCCTTGCTCACGATGTTAAGAATAGAGTCATAAGAAGACAGTTTGCACGGTCAGGAGAGACAGTTTCTCGGCACTTCAACGC
AACTCTAAGCGTCGTACTACGGTTGTACGAAGTTCTGCTTAAGAAACCGGTACCGATCACGGGTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTGGGTGGCGAGG
TGATAATGGAACGTTCAGACCCGGCTACTGATAACTGCCCAAAAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGC
CACGTCACAGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGGGAAGCCGAAATTCTATGTCGTGTTTGTTGGGCGTAACCTAGGAATTTACACTTCCTGGGTTGAATGCCACAAACAAGTAAACCAGTTTAGGGGAGCAGTACA
CAAGTCGTATGCAACATGTGCAGAAGCAGAGTATGCATTTAGGCATTTCGTAATGGGGACCAGTGGTCGAGCGAACCTCATGGATGAACATGAAGCGTGTCGTAACCGAC
CCGTAAGGGCAAATGGTCAAAATGTGGGAAAATGTTATTGTCTGAGTAGGATGTTCGTAGGTATGCTTAGGACGAATTTCGGTTTGGTAGGGACGAAAATCGTAGACGTT
GAAGAGATGGTTGCGATGTTCTTACACATCCTTGCTCACGATGTTAAGAATAGAGTCATAAGAAGACAGTTTGCACGGTCAGGAGAGACAGTTTCTCGGCACTTCAACGC
AACTCTAAGCGTCGTACTACGGTTGTACGAAGTTCTGCTTAAGAAACCGGTACCGATCACGGGTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTGGGTGGCGAGG
TGATAATGGAACGTTCAGACCCGGCTACTGATAACTGCCCAAAAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGC
CACGTCACAGCTCGTTAG
Protein sequenceShow/hide protein sequence
MMGKPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEAEYAFRHFVMGTSGRANLMDEHEACRNRPVRANGQNVGKCYCLSRMFVGMLRTNFGLVGTKIVDV
EEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVGGEVIMERSDPATDNCPKESVAGRLEGANSVLQQNWEQNC
HVTAR