; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001816 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001816
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:2849127..2858689
RNA-Seq ExpressionSpg001816
SyntenySpg001816
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.5e-1436.36Show/hide
Query:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE
        +W+PP  N WKLN +A+W A +N GG+GWI  D  G +I+A C+ I  +  I  LE  AI EG+ A +R+   R      P+ +ESDS   I  L+R+ +
Subjt:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE

Query:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN
        DQ+E+    + I  +     + S     R  N
Subjt:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]8.7e-1239.45Show/hide
Query:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN
        ++  RW+PP  N WKLN DA+W A +N  G+GWI  D  G +I+ GC+ I  +  I  LE  AI EG+ A +R+   R      P+ +ESDS   I  L+
Subjt:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN

Query:  REAEDQSEL
        R  + + +L
Subjt:  REAEDQSEL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]8.7e-1239.45Show/hide
Query:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN
        ++  RW+PP  N WKLN DA+W A +N  G+GWI  D  G +I+ GC+ I  +  I  LE  AI EG+ A +R+   R      P+ +ESDS   I  L+
Subjt:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN

Query:  REAEDQSEL
        R  + + +L
Subjt:  REAEDQSEL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.8e-1234.85Show/hide
Query:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE
        +W PP  + W LN DASW   ++ GG+GWI    +G ++ AG + +     +K+LEA AILEG+         R      PL +E+DSA V   LNR+ E
Subjt:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE

Query:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN
        D ++     + I++L     + +F+K  R  N
Subjt:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.2e-1538.06Show/hide
Query:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFK--PPLVVESDSATVIKALNRE
        RW+PP  N WKLN DA+W A +N GG+GWI  D  G +I+A C+ I  +  I  LE  AI EG+ A +R+   R I  +   P+ +ESDS   I  L+R+
Subjt:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFK--PPLVVESDSATVIKALNRE

Query:  AEDQSELALFTKVIIDLAPFANVASFSKCKRAEN
         +DQ+E+    + I  +     + S     R  N
Subjt:  AEDQSELALFTKVIIDLAPFANVASFSKCKRAEN

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.2e-1436.36Show/hide
Query:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE
        +W+PP  N WKLN +A+W A +N GG+GWI  D  G +I+A C+ I  +  I  LE  AI EG+ A +R+   R      P+ +ESDS   I  L+R+ +
Subjt:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE

Query:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN
        DQ+E+    + I  +     + S     R  N
Subjt:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.2e-1239.45Show/hide
Query:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN
        ++  RW+PP  N WKLN DA+W A +N  G+GWI  D  G +I+ GC+ I  +  I  LE  AI EG+ A +R+   R      P+ +ESDS   I  L+
Subjt:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN

Query:  REAEDQSEL
        R  + + +L
Subjt:  REAEDQSEL

A0A6J1DNV9 uncharacterized protein LOC1110224038.5e-1334.85Show/hide
Query:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE
        +W PP  + W LN DASW   ++ GG+GWI    +G ++ AG + +     +K+LEA AILEG+         R      PL +E+DSA V   LNR+ E
Subjt:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALNREAE

Query:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN
        D ++     + I++L     + +F+K  R  N
Subjt:  DQSELALFTKVIIDLAPFANVASFSKCKRAEN

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X24.2e-1239.45Show/hide
Query:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN
        ++  RW+PP  N WKLN DA+W A +N  G+GWI  D  G +I+ GC+ I  +  I  LE  AI EG+ A +R+   R      P+ +ESDS   I  L+
Subjt:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN

Query:  REAEDQSEL
        R  + + +L
Subjt:  REAEDQSEL

A0A6J1DSV1 uncharacterized protein LOC1110236081.1e-1538.06Show/hide
Query:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFK--PPLVVESDSATVIKALNRE
        RW+PP  N WKLN DA+W A +N GG+GWI  D  G +I+A C+ I  +  I  LE  AI EG+ A +R+   R I  +   P+ +ESDS   I  L+R+
Subjt:  RWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFK--PPLVVESDSATVIKALNRE

Query:  AEDQSELALFTKVIIDLAPFANVASFSKCKRAEN
         +DQ+E+    + I  +     + S     R  N
Subjt:  AEDQSELALFTKVIIDLAPFANVASFSKCKRAEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)1.4e-0424.58Show/hide
Query:  EADEIIWNV--YGQKE--DWKPQDFWDGMTQHLSNQDLTRATIILWESHSSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRIN
        + D   W V   G++E  +W      D    H + Q   R +          + W PP E   K N D+ +    +     WI  DSNG +I +GC ++ 
Subjt:  EADEIIWNV--YGQKE--DWKPQDFWDGMTQHLSNQDLTRATIILWESHSSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRIN

Query:  HKWAIKILEAKAILEGIE
          ++    EA   L  ++
Subjt:  HKWAIKILEAKAILEGIE

AT4G29090.1 Ribonuclease H-like superfamily protein5.5e-0429.91Show/hide
Query:  SHSSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKW--AIKILEAKAILEGIEAYLRKSDAREICFKPPLVV-ESDSATV
        + SS  RWRPP     K N DA+W   +   G+GW+  +  G +          KW  A  + + K++LE     +R +      F+   V+ ESDS  +
Subjt:  SHSSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKW--AIKILEAKAILEGIEAYLRKSDAREICFKPPLVV-ESDSATV

Query:  IKALNRE
        I+ LN +
Subjt:  IKALNRE

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0624.26Show/hide
Query:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN
        S + +W PP  ++ K N DAS   ++ + G+GWI  +S G++IE G  +   +   +  E   ++  I+A       +       ++ E D+ T+ + +N
Subjt:  SSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAYLRKSDAREICFKPPLVVESDSATVIKALN

Query:  REAEDQSELALFTKVIIDLAPFANVASFSKCKRAEN
         ++ +   L  F   I    P      FS   R +N
Subjt:  REAEDQSELALFTKVIIDLAPFANVASFSKCKRAEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGGAGGGCAACCGTCGGGTTTGCACAAGGAAGCTAGGAGAACCAGAGGAAATGACCATGGAGGGCAACCATATGGTTTGCACAGAGGAGCATGGAGACCAAAA
TGAAAGCAGAACGAAGGAAAATGAGCTGAGTCTGGTGGAAATCGAAGATGCAGAGGACCCTCAGACTGTGATGAGACAGATGGAAAGGTTAAAGATTGAAGAAGAGAAAA
GAGTCGTTGAGATCGAAGGTGACGACTTAGAGGAAACTGATAGAGATTTTGAAAACTCAATAGCCTGCAAGATCCTCACGAAGTATGCCATAGCTTTGGGGAATTCTATT
GGAGAGTTTGAAGCGGTTGAGTCAGACGAAAATGATAAAATGGAGGGAGAATCGCTAAGAGTAAAGCAAGCCATCTCCTTCAAGATTTCAGCCGCACAACAGATTTCAGC
CAACCCTTCTTCTCCGGTGATCGGCGTCTCCTCCAGCAGTCCTCTCCACGGCGGCGCGCGACGATACGGTAGCAGGTGCAGCGGGTTCGTTCAACAGCAGCAATGGTCGG
CGCCTCTTCGTGGATCTCTGCCGTCGGCGAGCAGCGGTTTGGTGCGAGCTCCAGCTGGTCGCGACGGTAGATCGTCTCAACTCCGGCAAGGCGCGTGCTTTCCGGTGTTT
TTCACGGCAGATCGACGGTGGTTGGGTTGCAGCAACTGTTCGGCACGGCTGTGTGGCTGTCATCGGGCAGGACGACGTTTCAGCAGTGGGTATTTTTCGGCCAAGATTCA
AGCACGAACAGTAGCAGTTTTAGGTGTTTGGAGTAATTTTCCAGCTTCTTCAATCTTGGGACAAAGTGGAAGAGGGAGAGGAAGGTTCGGCAGAGCGTGGAAAGGAGGCT
TTAACAAATCCTGGAGATCCGTCGAACAAGAAGTTGAGGAAAAGAGTGTTGAAAACCAGCCTTTCGCAAAGATAAAAGAAAACAGGCCGAACACAAGGAGAAGCAACGGC
CAGAGAAGGAACCAGACAACAATGGATGATTGGAACAGGGAGGAATGGGAGAAAGAACTAGCGGATAAACGACAAGCAAGAAGAACAGTGACAGGCCAGCTGACACATCA
GGGACAAAAAGAAGTCAGCGGAGGCTGGAAACCATCCCCATCGGACGCCATGATTGTGCTAAGCTGGAATGTTCGAGGTTTGGGGAATCCTCGAACATTCCGAGCACTTC
GTCACGAAGTGAAAAGTAGAAGGCTTAAAGAGTTGCTAAAAGATAAAGGGGAAGCTGAATGTGTCCTAAATATCCCTAGGAGATGTGTCACAGAGGCTGATGAGATCATC
TGGAATGTTTACGGTCAAAAAGAGGATTGGAAACCACAGGATTTTTGGGATGGGATGACCCAACACCTCAGTAATCAAGATCTAACAAGAGCAACTATAATTCTATGGGA
GAGCCACTCGAGTCACGAGAGATGGAGACCTCCGGAGGAAAATCGCTGGAAACTTAATGTCGATGCCTCTTGGTGTGCGAAATCGAACCTTGGCGGCGTGGGGTGGATCC
CTTGTGACTCCAATGGATCTCTAATTGAAGCGGGATGCAAAAGAATTAACCACAAATGGGCGATCAAAATCCTTGAGGCAAAGGCCATCCTAGAAGGTATTGAAGCTTAC
CTGAGGAAGTCAGATGCGAGGGAGATCTGCTTCAAGCCCCCGCTGGTGGTAGAATCAGACTCAGCTACAGTGATTAAGGCGCTTAATCGAGAGGCGGAAGATCAATCGGA
ATTGGCTTTGTTCACAAAGGTCATTATTGATCTTGCCCCCTTTGCAAATGTTGCTAGCTTCTCGAAATGTAAAAGAGCCGAAAACTTCTGGGGCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACATGGAGGGCAACCGTCGGGTTTGCACAAGGAAGCTAGGAGAACCAGAGGAAATGACCATGGAGGGCAACCATATGGTTTGCACAGAGGAGCATGGAGACCAAAA
TGAAAGCAGAACGAAGGAAAATGAGCTGAGTCTGGTGGAAATCGAAGATGCAGAGGACCCTCAGACTGTGATGAGACAGATGGAAAGGTTAAAGATTGAAGAAGAGAAAA
GAGTCGTTGAGATCGAAGGTGACGACTTAGAGGAAACTGATAGAGATTTTGAAAACTCAATAGCCTGCAAGATCCTCACGAAGTATGCCATAGCTTTGGGGAATTCTATT
GGAGAGTTTGAAGCGGTTGAGTCAGACGAAAATGATAAAATGGAGGGAGAATCGCTAAGAGTAAAGCAAGCCATCTCCTTCAAGATTTCAGCCGCACAACAGATTTCAGC
CAACCCTTCTTCTCCGGTGATCGGCGTCTCCTCCAGCAGTCCTCTCCACGGCGGCGCGCGACGATACGGTAGCAGGTGCAGCGGGTTCGTTCAACAGCAGCAATGGTCGG
CGCCTCTTCGTGGATCTCTGCCGTCGGCGAGCAGCGGTTTGGTGCGAGCTCCAGCTGGTCGCGACGGTAGATCGTCTCAACTCCGGCAAGGCGCGTGCTTTCCGGTGTTT
TTCACGGCAGATCGACGGTGGTTGGGTTGCAGCAACTGTTCGGCACGGCTGTGTGGCTGTCATCGGGCAGGACGACGTTTCAGCAGTGGGTATTTTTCGGCCAAGATTCA
AGCACGAACAGTAGCAGTTTTAGGTGTTTGGAGTAATTTTCCAGCTTCTTCAATCTTGGGACAAAGTGGAAGAGGGAGAGGAAGGTTCGGCAGAGCGTGGAAAGGAGGCT
TTAACAAATCCTGGAGATCCGTCGAACAAGAAGTTGAGGAAAAGAGTGTTGAAAACCAGCCTTTCGCAAAGATAAAAGAAAACAGGCCGAACACAAGGAGAAGCAACGGC
CAGAGAAGGAACCAGACAACAATGGATGATTGGAACAGGGAGGAATGGGAGAAAGAACTAGCGGATAAACGACAAGCAAGAAGAACAGTGACAGGCCAGCTGACACATCA
GGGACAAAAAGAAGTCAGCGGAGGCTGGAAACCATCCCCATCGGACGCCATGATTGTGCTAAGCTGGAATGTTCGAGGTTTGGGGAATCCTCGAACATTCCGAGCACTTC
GTCACGAAGTGAAAAGTAGAAGGCTTAAAGAGTTGCTAAAAGATAAAGGGGAAGCTGAATGTGTCCTAAATATCCCTAGGAGATGTGTCACAGAGGCTGATGAGATCATC
TGGAATGTTTACGGTCAAAAAGAGGATTGGAAACCACAGGATTTTTGGGATGGGATGACCCAACACCTCAGTAATCAAGATCTAACAAGAGCAACTATAATTCTATGGGA
GAGCCACTCGAGTCACGAGAGATGGAGACCTCCGGAGGAAAATCGCTGGAAACTTAATGTCGATGCCTCTTGGTGTGCGAAATCGAACCTTGGCGGCGTGGGGTGGATCC
CTTGTGACTCCAATGGATCTCTAATTGAAGCGGGATGCAAAAGAATTAACCACAAATGGGCGATCAAAATCCTTGAGGCAAAGGCCATCCTAGAAGGTATTGAAGCTTAC
CTGAGGAAGTCAGATGCGAGGGAGATCTGCTTCAAGCCCCCGCTGGTGGTAGAATCAGACTCAGCTACAGTGATTAAGGCGCTTAATCGAGAGGCGGAAGATCAATCGGA
ATTGGCTTTGTTCACAAAGGTCATTATTGATCTTGCCCCCTTTGCAAATGTTGCTAGCTTCTCGAAATGTAAAAGAGCCGAAAACTTCTGGGGCTCATAA
Protein sequenceShow/hide protein sequence
MDMEGNRRVCTRKLGEPEEMTMEGNHMVCTEEHGDQNESRTKENELSLVEIEDAEDPQTVMRQMERLKIEEEKRVVEIEGDDLEETDRDFENSIACKILTKYAIALGNSI
GEFEAVESDENDKMEGESLRVKQAISFKISAAQQISANPSSPVIGVSSSSPLHGGARRYGSRCSGFVQQQQWSAPLRGSLPSASSGLVRAPAGRDGRSSQLRQGACFPVF
FTADRRWLGCSNCSARLCGCHRAGRRFSSGYFSAKIQARTVAVLGVWSNFPASSILGQSGRGRGRFGRAWKGGFNKSWRSVEQEVEEKSVENQPFAKIKENRPNTRRSNG
QRRNQTTMDDWNREEWEKELADKRQARRTVTGQLTHQGQKEVSGGWKPSPSDAMIVLSWNVRGLGNPRTFRALRHEVKSRRLKELLKDKGEAECVLNIPRRCVTEADEII
WNVYGQKEDWKPQDFWDGMTQHLSNQDLTRATIILWESHSSHERWRPPEENRWKLNVDASWCAKSNLGGVGWIPCDSNGSLIEAGCKRINHKWAIKILEAKAILEGIEAY
LRKSDAREICFKPPLVVESDSATVIKALNREAEDQSELALFTKVIIDLAPFANVASFSKCKRAENFWGS