; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001818 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001818
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:4207403..4208601
RNA-Seq ExpressionSpg001818
SyntenySpg001818
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]1.6e-1430.5Show/hide
Query:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI------------------------------------------NYLDGMFQSKAAL
        M + +I D +DEVDS  ATT  ++I++IETSN+WS+WRD LAE+I                                           YL+ + +  A  
Subjt:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI------------------------------------------NYLDGMFQSKAAL

Query:  NVGFT------------LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS----------GRIEPQG--GCRN
          G              +K+ + A+AEM G  CSGFGWNDE K I A+K+ FD    S  A +  L+++   +   S          GR E     G  +
Subjt:  NVGFT------------LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS----------GRIEPQG--GCRN

Query:  ALGKWAPTCQKMRPED-------GLQGMPD-------SRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW
          G  A     M   D       GL   PD       +R       S GSKRKR G      +IVR  +    EQL  IAEW
Subjt:  ALGKWAPTCQKMRPED-------GLQGMPD-------SRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW

KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-1330.89Show/hide
Query:  DELDEVDSA-SATTDGENINFIETSNKWSRWRDELAEQINYL------------------------DGMFQSKAALNVGFTLKKQYQAIAEMMGHGCSGF
        D +DE DSA +ATT G+NI +IET+N+WS+WRDEL E  N +                         G ++S     +  TLK+ +QAI EM    CSGF
Subjt:  DELDEVDSA-SATTDGENINFIETSNKWSRWRDELAEQINYL------------------------DGMFQSKAALNVGFTLKKQYQAIAEMMGHGCSGF

Query:  GWNDEFKYIEAKKKTFDLTIQSQKACETSLSR-----------------TSRTWPVFS--GRIEPQGGCRNALGKWAPTCQKMRPEDGLQ-GMPDSRTCP
         WNDE KYI  +K+ FD  I+S  A ++ L++                 T R    F+  G  EP G     +              G+     D RT  
Subjt:  GWNDEFKYIEAKKKTFDLTIQSQKACETSLSR-----------------TSRTWPVFS--GRIEPQGGCRNALGKWAPTCQKMRPEDGLQ-GMPDSRTCP

Query:  TGRSSWG------SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW
           +S G      SKRKR        +++   +    +QL++I EW
Subjt:  TGRSSWG------SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW

KAA0035413.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1528.57Show/hide
Query:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI----NYLDGMFQSKAALNVGFT---------------------------------
        M   +I D++DEVDS  AT+  ++I++IETSN+W+RWRD+L E++       + M  S   L   +T                                 
Subjt:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI----NYLDGMFQSKAALNVGFT---------------------------------

Query:  -LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS---GRIEPQGGCRNALGK--------WAPTCQKMRPE--
         LK+ + AIAEM G  CS FGWNDE K I A+K+ FD  ++S    +  L+++   +   S   G+    GG   +           + P      P+  
Subjt:  -LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS---GRIEPQGGCRNALGK--------WAPTCQKMRPE--

Query:  -------------DGLQGMPDSRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW
                     D L G+ +++       S GSKRKR G      +++R  +    EQL  IAEW
Subjt:  -------------DGLQGMPDSRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-1533.2Show/hide
Query:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQINYLDGMFQSKAA---LNV-GFTLKKQYQAIA-------------------EMMGH
        M + EI D+LDE DS  ATT G+ IN+IE SN+WS WRD+LA  + + D   Q +      N+ G   KKQ    A                   EM G 
Subjt:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQINYLDGMFQSKAA---LNV-GFTLKKQYQAIA-------------------EMMGH

Query:  GCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPTCQKMRPEDGLQGMPD--SRTCPTGRSSWGSKRKRS
         CSGFGWN+EF+ I A++  FD  ++S  A +  L    +++P +   +    G   A G  + T       D    +P+  + T P G S         
Subjt:  GCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPTCQKMRPEDGLQGMPD--SRTCPTGRSSWGSKRKRS

Query:  GSDMHM---------AEIVRDGMAMQTEQLKSIAEWRKEKRATD
           +H+         AE++R  M    EQLK+IA+W KEKRA +
Subjt:  GSDMHM---------AEIVRDGMAMQTEQLKSIAEWRKEKRATD

KAA0064030.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-1431.43Show/hide
Query:  DELDEVDSASATTD-GENINFIETSNKWSRWRDELAEQI-------------NYLDGMFQSKAALNVGF-------------TLKKQYQAIAEMMGHGCS
        D++DE  S  ATT   E+I++IET+N+WS+WRDELA+ +              YL  + +  A    G              TLK  +Q IAEM G  CS
Subjt:  DELDEVDSASATTD-GENINFIETSNKWSRWRDELAEQI-------------NYLDGMFQSKAALNVGF-------------TLKKQYQAIAEMMGHGCS

Query:  GFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPT-----------CQKMRPEDGLQGMPDSRTCPTGRSSWG
        GFGWNDE K I A+K+ FD  ++S  A +  +   ++ +P ++  +    GC  A  ++A T             +    DG +  P     P   SS  
Subjt:  GFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPT-----------CQKMRPEDGLQGMPDSRTCPTGRSSWG

Query:  SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEWRKEKRATDG-VC
         ++K+S  D+ + E +   +    EQL+ IAEW     A +  VC
Subjt:  SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEWRKEKRATDG-VC

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein5.5e-1628.57Show/hide
Query:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI----NYLDGMFQSKAALNVGFT---------------------------------
        M   +I D++DEVDS  AT+  ++I++IETSN+W+RWRD+L E++       + M  S   L   +T                                 
Subjt:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI----NYLDGMFQSKAALNVGFT---------------------------------

Query:  -LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS---GRIEPQGGCRNALGK--------WAPTCQKMRPE--
         LK+ + AIAEM G  CS FGWNDE K I A+K+ FD  ++S    +  L+++   +   S   G+    GG   +           + P      P+  
Subjt:  -LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS---GRIEPQGGCRNALGK--------WAPTCQKMRPE--

Query:  -------------DGLQGMPDSRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW
                     D L G+ +++       S GSKRKR G      +++R  +    EQL  IAEW
Subjt:  -------------DGLQGMPDSRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW

A0A5A7V9W9 Retrotransposon protein1.0e-1431.43Show/hide
Query:  DELDEVDSASATTD-GENINFIETSNKWSRWRDELAEQI-------------NYLDGMFQSKAALNVGF-------------TLKKQYQAIAEMMGHGCS
        D++DE  S  ATT   E+I++IET+N+WS+WRDELA+ +              YL  + +  A    G              TLK  +Q IAEM G  CS
Subjt:  DELDEVDSASATTD-GENINFIETSNKWSRWRDELAEQI-------------NYLDGMFQSKAALNVGF-------------TLKKQYQAIAEMMGHGCS

Query:  GFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPT-----------CQKMRPEDGLQGMPDSRTCPTGRSSWG
        GFGWNDE K I A+K+ FD  ++S  A +  +   ++ +P ++  +    GC  A  ++A T             +    DG +  P     P   SS  
Subjt:  GFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPT-----------CQKMRPEDGLQGMPDSRTCPTGRSSWG

Query:  SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEWRKEKRATDG-VC
         ++K+S  D+ + E +   +    EQL+ IAEW     A +  VC
Subjt:  SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEWRKEKRATDG-VC

A0A5D3BQI7 Retrotransposon protein8.8e-1430.89Show/hide
Query:  DELDEVDSA-SATTDGENINFIETSNKWSRWRDELAEQINYL------------------------DGMFQSKAALNVGFTLKKQYQAIAEMMGHGCSGF
        D +DE DSA +ATT G+NI +IET+N+WS+WRDEL E  N +                         G ++S     +  TLK+ +QAI EM    CSGF
Subjt:  DELDEVDSA-SATTDGENINFIETSNKWSRWRDELAEQINYL------------------------DGMFQSKAALNVGFTLKKQYQAIAEMMGHGCSGF

Query:  GWNDEFKYIEAKKKTFDLTIQSQKACETSLSR-----------------TSRTWPVFS--GRIEPQGGCRNALGKWAPTCQKMRPEDGLQ-GMPDSRTCP
         WNDE KYI  +K+ FD  I+S  A ++ L++                 T R    F+  G  EP G     +              G+     D RT  
Subjt:  GWNDEFKYIEAKKKTFDLTIQSQKACETSLSR-----------------TSRTWPVFS--GRIEPQGGCRNALGKWAPTCQKMRPEDGLQ-GMPDSRTCP

Query:  TGRSSWG------SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW
           +S G      SKRKR        +++   +    +QL++I EW
Subjt:  TGRSSWG------SKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW

A0A5D3DG22 Retrotransposon protein2.7e-1533.2Show/hide
Query:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQINYLDGMFQSKAA---LNV-GFTLKKQYQAIA-------------------EMMGH
        M + EI D+LDE DS  ATT G+ IN+IE SN+WS WRD+LA  + + D   Q +      N+ G   KKQ    A                   EM G 
Subjt:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQINYLDGMFQSKAA---LNV-GFTLKKQYQAIA-------------------EMMGH

Query:  GCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPTCQKMRPEDGLQGMPD--SRTCPTGRSSWGSKRKRS
         CSGFGWN+EF+ I A++  FD  ++S  A +  L    +++P +   +    G   A G  + T       D    +P+  + T P G S         
Subjt:  GCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFSGRIEPQGGCRNALGKWAPTCQKMRPEDGLQGMPD--SRTCPTGRSSWGSKRKRS

Query:  GSDMHM---------AEIVRDGMAMQTEQLKSIAEWRKEKRATD
           +H+         AE++R  M    EQLK+IA+W KEKRA +
Subjt:  GSDMHM---------AEIVRDGMAMQTEQLKSIAEWRKEKRATD

E5GCB5 Retrotransposon protein7.9e-1530.5Show/hide
Query:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI------------------------------------------NYLDGMFQSKAAL
        M + +I D +DEVDS  ATT  ++I++IETSN+WS+WRD LAE+I                                           YL+ + +  A  
Subjt:  MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQI------------------------------------------NYLDGMFQSKAAL

Query:  NVGFT------------LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS----------GRIEPQG--GCRN
          G              +K+ + A+AEM G  CSGFGWNDE K I A+K+ FD    S  A +  L+++   +   S          GR E     G  +
Subjt:  NVGFT------------LKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACETSLSRTSRTWPVFS----------GRIEPQG--GCRN

Query:  ALGKWAPTCQKMRPED-------GLQGMPD-------SRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW
          G  A     M   D       GL   PD       +R       S GSKRKR G      +IVR  +    EQL  IAEW
Subjt:  ALGKWAPTCQKMRPED-------GLQGMPD-------SRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGATCATGAAATTCCCGATGAGTTGGATGAGGTGGACTCTGCATCGGCTACAACTGATGGGGAGAATATTAATTTCATTGAAACTTCCAACAAATGGAGCCGATG
GAGGGATGAGTTGGCAGAACAAATAAACTACCTGGACGGGATGTTTCAGTCCAAAGCAGCATTGAATGTAGGGTTCACCCTAAAGAAACAGTACCAGGCCATTGCAGAAA
TGATGGGTCATGGATGCAGCGGCTTTGGGTGGAACGATGAATTTAAGTATATCGAGGCAAAGAAGAAAACGTTTGACCTAACCATCCAATCGCAAAAGGCATGTGAAACA
AGCCTTTCTCGCACTTCAAGAACTTGGCCTGTGTTTTCGGGAAGGATCGAGCCACAGGGAGGGTGTCGGAATGCATTGGGTAAATGGGCTCCAACGTGCCAGAAGATGAG
GCCAGAAGATGGGCTTCAGGGGATGCCAGACAGTCGAACTTGCCCAACAGGAAGGTCTTCATGGGGGAGTAAGAGGAAGAGGTCAGGGTCTGACATGCACATGGCAGAAA
TTGTTAGAGATGGAATGGCCATGCAAACAGAGCAACTGAAGTCCATTGCAGAGTGGCGGAAAGAAAAACGTGCCACTGACGGTGTGTGCGCTATGACACTGCTCGAGTGC
AAGTATACACTATTAAGTAATAAAGTGGAAAGTATTCCGGGTATCGAACCCAAGGGAGATGGTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGATCATGAAATTCCCGATGAGTTGGATGAGGTGGACTCTGCATCGGCTACAACTGATGGGGAGAATATTAATTTCATTGAAACTTCCAACAAATGGAGCCGATG
GAGGGATGAGTTGGCAGAACAAATAAACTACCTGGACGGGATGTTTCAGTCCAAAGCAGCATTGAATGTAGGGTTCACCCTAAAGAAACAGTACCAGGCCATTGCAGAAA
TGATGGGTCATGGATGCAGCGGCTTTGGGTGGAACGATGAATTTAAGTATATCGAGGCAAAGAAGAAAACGTTTGACCTAACCATCCAATCGCAAAAGGCATGTGAAACA
AGCCTTTCTCGCACTTCAAGAACTTGGCCTGTGTTTTCGGGAAGGATCGAGCCACAGGGAGGGTGTCGGAATGCATTGGGTAAATGGGCTCCAACGTGCCAGAAGATGAG
GCCAGAAGATGGGCTTCAGGGGATGCCAGACAGTCGAACTTGCCCAACAGGAAGGTCTTCATGGGGGAGTAAGAGGAAGAGGTCAGGGTCTGACATGCACATGGCAGAAA
TTGTTAGAGATGGAATGGCCATGCAAACAGAGCAACTGAAGTCCATTGCAGAGTGGCGGAAAGAAAAACGTGCCACTGACGGTGTGTGCGCTATGACACTGCTCGAGTGC
AAGTATACACTATTAAGTAATAAAGTGGAAAGTATTCCGGGTATCGAACCCAAGGGAGATGGTGACTAG
Protein sequenceShow/hide protein sequence
MGDHEIPDELDEVDSASATTDGENINFIETSNKWSRWRDELAEQINYLDGMFQSKAALNVGFTLKKQYQAIAEMMGHGCSGFGWNDEFKYIEAKKKTFDLTIQSQKACET
SLSRTSRTWPVFSGRIEPQGGCRNALGKWAPTCQKMRPEDGLQGMPDSRTCPTGRSSWGSKRKRSGSDMHMAEIVRDGMAMQTEQLKSIAEWRKEKRATDGVCAMTLLEC
KYTLLSNKVESIPGIEPKGDGD