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Spg001819 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001819
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold8:32884455..32887585
RNA-Seq ExpressionSpg001819
SyntenySpg001819
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040209.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-0543.75Show/hide
Query:  VGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF
        VGD++    VPKK  FFIW+V    + T++ L R+ TSL   FCC++C+ +E+DL+H+   C F
Subjt:  VGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF

KAG7026028.1 hypothetical protein SDJN02_12526, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-0642.86Show/hide
Query:  KGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDFVVLFATPFWRWLVFSVLVTEGKRNNTTFRGIERDPS
        K + TL+  SRK+ +L    CCI+CR +E+DL+HIL +C F     + F++          G  NN TF+GIERDPS
Subjt:  KGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDFVVLFATPFWRWLVFSVLVTEGKRNNTTFRGIERDPS

TYK07871.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-0644.62Show/hide
Query:  LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF
        LVGD++    VPKK  FFIW+V    + T++ L R+ TSL   FCC++C+ +E+DL+H+   C F
Subjt:  LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF

XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]9.5e-1142.86Show/hide
Query:  VLGLLSLIGDIVLRSGRRNV----PSPNLKGFSCHSFFRYPS----LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEK
        V  LLS +     R GRR++    P+P+  GFS  S    P+    LV D ++S  VPKKV FFIWQV    +  ++ L R+ TSL GLFCC++C+  E 
Subjt:  VLGLLSLIGDIVLRSGRRNV----PSPNLKGFSCHSFFRYPS----LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEK

Query:  DLNHI
        DL+H+
Subjt:  DLNHI

XP_038887741.1 epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Benincasa hispida]5.4e-0635.85Show/hide
Query:  LLSLIGDIVLRSGRRNVP--SPN-LKGFSC-HSFFRYPSLVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILL
        LLSL+GDI L S RRN+   SPN  KG SC  S          ++  +K+ K V+FF WQ     + T++ +    + L GL  C +C  + ++L+HI +
Subjt:  LLSLIGDIVLRSGRRNVP--SPN-LKGFSC-HSFFRYPSLVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILL

Query:  SCDFVV
         C F +
Subjt:  SCDFVV

TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025434.6e-1142.86Show/hide
Query:  VLGLLSLIGDIVLRSGRRNV----PSPNLKGFSCHSFFRYPS----LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEK
        V  LLS +     R GRR++    P+P+  GFS  S    P+    LV D ++S  VPKKV FFIWQV    +  ++ L R+ TSL GLFCC++C+  E 
Subjt:  VLGLLSLIGDIVLRSGRRNV----PSPNLKGFSCHSFFRYPS----LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEK

Query:  DLNHI
        DL+H+
Subjt:  DLNHI

A0A5A7TG20 Ty3-gypsy retrotransposon protein9.9e-0643.75Show/hide
Query:  VGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF
        VGD++    VPKK  FFIW+V    + T++ L R+ TSL   FCC++C+ +E+DL+H+   C F
Subjt:  VGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF

A0A5A7UL95 Golgin subfamily A member 6-like protein 22 isoform X23.8e-0540Show/hide
Query:  DVLGLLSLIGDIVLRSGRRNV----PSPNLKGFSCHSFF-------RYPSLVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICR
        +V  LL+L+     +  RR+V    P+P++ GF C S F        Y   V D +   KVPKKV FF WQV       ++ L RK TSL   FCCI+CR
Subjt:  DVLGLLSLIGDIVLRSGRRNV----PSPNLKGFSCHSFF-------RYPSLVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICR

A0A5D3C7M9 Ty3-gypsy retrotransposon protein3.4e-0644.62Show/hide
Query:  LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF
        LVGD++    VPKK  FFIW+V    + T++ L R+ TSL   FCC++C+ +E+DL+H+   C F
Subjt:  LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF

A0A7N2ME17 Uncharacterized protein1.4e-0443.08Show/hide
Query:  LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF
        LVG SI+ +KVPK+V F +W V   G+ T++ L +K   L   +CC +CR  E+ ++H+LL C F
Subjt:  LVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAACTAGGGATGTCTTGGGTCTCTTATCTTTGATTGGAGATATCGTTCTTAGATCGGGGAGAAGGAATGTTCCTAGCCCTAACCTCAAGGGTTTTTCTTGTCACTCATT
CTTTCGGTATCCTTCCTTGGTTGGTGATTCCATTTTTTCTTTGAAAGTTCCAAAGAAGGTTCACTTCTTCATTTGGCAGGTCGACACAAAAGGGTTAACCACCTTAAATG
GGCTCTCTAGGAAGCTGACCTCTTTGTTTGGACTGTTTTGTTGCATTATTTGTCGGATGATGGAGAAAGACCTTAACCATATTCTTTTGAGCTGTGACTTTGTTGTTTTG
TTTGCGACTCCTTTTTGGAGGTGGTTGGTTTTCAGTGTGCTAGTCACAGAGGGCAAGAGAAATAATACGACCTTTAGAGGGATTGAGAGAGACCCGAGTAAGTGTTCGAT
TAAGTTCGTAACACTTCGACTTGGATACCCACTGCCCAAGGACTATTCTAGCGCATCGTTAGAGGTTTGTAAAACCCGTCTAGCATGGAAGCGGGTTCGTTTGGGTAAGT
TCTTGGCTGTCCCTTCGTTTGTAGCTTTGAAGTTAGCGGCTGAAAAGCCTTATTTGGAGCCGTTTGGCGAACACCCATTGCCCGTTTTCGAGGTGCTTGTGGAGCTTGGT
GCAAGTGTCGCCTCGTTGGTAATTAGAAGTGATTTCATGGCGCGTATTGCTTGCGAGTGGTTGCGTAGCATGGCGCGTAATGCGTGCGAGTGGTTTTGCGTAGCATGGCG
TGTAATGCATGCGAATGGCTTGCGCAGCGTGACGCGTAATGCACTTGTAAGGTAG
mRNA sequenceShow/hide mRNA sequence
AAAACTAGGGATGTCTTGGGTCTCTTATCTTTGATTGGAGATATCGTTCTTAGATCGGGGAGAAGGAATGTTCCTAGCCCTAACCTCAAGGGTTTTTCTTGTCACTCATT
CTTTCGGTATCCTTCCTTGGTTGGTGATTCCATTTTTTCTTTGAAAGTTCCAAAGAAGGTTCACTTCTTCATTTGGCAGGTCGACACAAAAGGGTTAACCACCTTAAATG
GGCTCTCTAGGAAGCTGACCTCTTTGTTTGGACTGTTTTGTTGCATTATTTGTCGGATGATGGAGAAAGACCTTAACCATATTCTTTTGAGCTGTGACTTTGTTGTTTTG
TTTGCGACTCCTTTTTGGAGGTGGTTGGTTTTCAGTGTGCTAGTCACAGAGGGCAAGAGAAATAATACGACCTTTAGAGGGATTGAGAGAGACCCGAGTAAGTGTTCGAT
TAAGTTCGTAACACTTCGACTTGGATACCCACTGCCCAAGGACTATTCTAGCGCATCGTTAGAGGTTTGTAAAACCCGTCTAGCATGGAAGCGGGTTCGTTTGGGTAAGT
TCTTGGCTGTCCCTTCGTTTGTAGCTTTGAAGTTAGCGGCTGAAAAGCCTTATTTGGAGCCGTTTGGCGAACACCCATTGCCCGTTTTCGAGGTGCTTGTGGAGCTTGGT
GCAAGTGTCGCCTCGTTGGTAATTAGAAGTGATTTCATGGCGCGTATTGCTTGCGAGTGGTTGCGTAGCATGGCGCGTAATGCGTGCGAGTGGTTTTGCGTAGCATGGCG
TGTAATGCATGCGAATGGCTTGCGCAGCGTGACGCGTAATGCACTTGTAAGGTAG
Protein sequenceShow/hide protein sequence
KTRDVLGLLSLIGDIVLRSGRRNVPSPNLKGFSCHSFFRYPSLVGDSIFSLKVPKKVHFFIWQVDTKGLTTLNGLSRKLTSLFGLFCCIICRMMEKDLNHILLSCDFVVL
FATPFWRWLVFSVLVTEGKRNNTTFRGIERDPSKCSIKFVTLRLGYPLPKDYSSASLEVCKTRLAWKRVRLGKFLAVPSFVALKLAAEKPYLEPFGEHPLPVFEVLVELG
ASVASLVIRSDFMARIACEWLRSMARNACEWFCVAWRVMHANGLRSVTRNALVR