; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001874 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001874
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibosomal protein
Genome locationscaffold8:32748762..32751642
RNA-Seq ExpressionSpg001874
SyntenySpg001874
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581832.1 hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia]4.3e-3383.15Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        SKLLIRTGNSL+NRL  + THQNN IW  Q+LS GHGV+VTPMLFPSVSKHQTAHHLQQND +SLRKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
KAG6606703.1 hypothetical protein SDJN03_00045, partial [Cucurbita argyrosperma subsp. sororia]6.6e-3482.02Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        S LL+RTGNSLINRL  N  HQ +RIWYPQTLSHGHG EVTPMLFPS+SKHQTA HLQQND +S+RKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
KAG7018271.1 hypothetical protein SDJN02_20139, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-3383.15Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        SKLLIRTGNSL+NRL  + THQNN IW  Q+LS GHGV+VTPMLFPSVSKHQTAHHLQQND +SLRKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
XP_022955351.1 uncharacterized protein LOC111457406 isoform X1 [Cucurbita moschata]4.3e-3383.15Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        SKLLIRTGNSL+NRL  + THQNN IW  Q+LS GHGV+VTPMLFPSVSKHQTAHHLQQND +SLRKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
XP_022997833.1 uncharacterized protein LOC111492674 [Cucurbita maxima]3.9e-3482.02Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        S LL+RTGNSLINRL  N THQ +RIWYPQTLSHGHG EVTPMLFPS+SKHQTA HLQQND +++RKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
TrEMBL top hitse value%identityAlignment
A0A6J1DFJ1 uncharacterized protein LOC1110203507.9e-3382.02Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        SKLLIR GNS INRL  N T Q++RIW  QTLSHGHGVEVTPMLFPSVSKHQT+HHLQQND +SLRKLES+G+FFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
A0A6J1GBE4 uncharacterized protein LOC1114524392.7e-3380.9Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        S LL+RTGNSLINRL  N  HQ +RIWY QTLSHGHG EVTPMLFPS+SKHQTA HLQQND +S+RKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
A0A6J1GTJ1 uncharacterized protein LOC111457406 isoform X12.1e-3383.15Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        SKLLIRTGNSL+NRL  + THQNN IW  Q+LS GHGV+VTPMLFPSVSKHQTAHHLQQND +SLRKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X22.1e-3383.15Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        SKLLIRTGNSL+NRL  + THQNN IW  Q+LS GHGV+VTPMLFPSVSKHQTAHHLQQND +SLRKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
A0A6J1KF33 uncharacterized protein LOC1114926741.9e-3482.02Show/hide
Query:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
        S LL+RTGNSLINRL  N THQ +RIWYPQTLSHGHG EVTPMLFPS+SKHQTA HLQQND +++RKLES+GIFFPFGL SLRFFLPDG
Subjt:  SKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G13882.1 Ribosomal protein L343.0e-0838.04Show/hide
Query:  SKLLIRTGNSLINRL----GSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPD
        +K LIR+G SL+NR      +N    N R  +      G   E+ P  FPS+S  Q++   + ND  SL++L   G  +P GL SL FFLP+
Subjt:  SKLLIRTGNSLINRL----GSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPD
AT3G13882.2 Ribosomal protein L341.4e-0544.23Show/hide
Query:  GVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPD
        G E+ P  FPS+S  Q++   + ND  SL++L   G  +P GL SL FFLP+
Subjt:  GVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTACAAATACGTCCCTCGCCGGGAAACTAATGTTCCACCCCATCCTCCAGCAGATGGTTCGCAGCTTGTGATCCACGATGAGGATGGGTGGTTTATCAGTTT
TCCGACAGAGGTTACTGTTCATTGTCGTTTCCCAGCGTGGCAGGTTGGGAATTCCCAACTCACGAGGTTGTCAGAAACGTGTGGCGGTGGGTCGCTAGTGGATGGCTGGA
GCCTGGCAAGGCGGGCTGGCGTCTGTCGAGGTTGGGCGGGTAGACGGGGGCAGCGGGGGTCTTTTGGTCGTGTGGTGACGTCGACAAAAGGTCATTTATTATTGTTTTGT
AAGTGGCGGGTCATATTCCATTATCATCCAGTGAAAAGTCATCCGTACAAAAATCCCTCCAAACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGCTGGGATCGAA
TTTCACGCATCAGAATAACAGGATTTGGTATCCCCAAACTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAAGCACCAGACCGCGC
ACCATTTGCAGCAGAACGACAACAAATCGTTGAGGAAGCTCGAATCCGACGGCATTTTCTTCCCTTTTGGTCTTCTGTCGCTCCGGTTCTTCTTGCCCGATGGTATGCAG
TTTCTTTCCTGCTCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTACAAATACGTCCCTCGCCGGGAAACTAATGTTCCACCCCATCCTCCAGCAGATGGTTCGCAGCTTGTGATCCACGATGAGGATGGGTGGTTTATCAGTTT
TCCGACAGAGGTTACTGTTCATTGTCGTTTCCCAGCGTGGCAGGTTGGGAATTCCCAACTCACGAGGTTGTCAGAAACGTGTGGCGGTGGGTCGCTAGTGGATGGCTGGA
GCCTGGCAAGGCGGGCTGGCGTCTGTCGAGGTTGGGCGGGTAGACGGGGGCAGCGGGGGTCTTTTGGTCGTGTGGTGACGTCGACAAAAGGTCATTTATTATTGTTTTGT
AAGTGGCGGGTCATATTCCATTATCATCCAGTGAAAAGTCATCCGTACAAAAATCCCTCCAAACTTCTGATTCGGACGGGAAATTCTTTGATCAATCGGCTGGGATCGAA
TTTCACGCATCAGAATAACAGGATTTGGTATCCCCAAACTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTATTTCCTTCAGTCTCTAAGCACCAGACCGCGC
ACCATTTGCAGCAGAACGACAACAAATCGTTGAGGAAGCTCGAATCCGACGGCATTTTCTTCCCTTTTGGTCTTCTGTCGCTCCGGTTCTTCTTGCCCGATGGTATGCAG
TTTCTTTCCTGCTCTGCTTGA
Protein sequenceShow/hide protein sequence
MSVYKYVPRRETNVPPHPPADGSQLVIHDEDGWFISFPTEVTVHCRFPAWQVGNSQLTRLSETCGGGSLVDGWSLARRAGVCRGWAGRRGQRGSFGRVVTSTKGHLLLFC
KWRVIFHYHPVKSHPYKNPSKLLIRTGNSLINRLGSNFTHQNNRIWYPQTLSHGHGVEVTPMLFPSVSKHQTAHHLQQNDNKSLRKLESDGIFFPFGLLSLRFFLPDGMQ
FLSCSA