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Spg001878 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001878
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:3592709..3596630
RNA-Seq ExpressionSpg001878
SyntenySpg001878
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-1453.66Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---
        V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---

Query:  EEAEARLDRVEDEAECEEGSGGL
        + ++AR         C EGS G+
Subjt:  EEAEARLDRVEDEAECEEGSGGL

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1659.18Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-1453.66Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---
        V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---

Query:  EEAEARLDRVEDEAECEEGSGGL
        + ++AR         C EGS G+
Subjt:  EEAEARLDRVEDEAECEEGSGGL

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.5e-1659.18Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.7e-1354.64Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIE
        V+KSNQKL+L   +     L++   D    +D +   L L   G +      PLSTLSVLRDNDAVVEIELPVPDTLP+S ES  S+SSTWLELY E
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.5e-1453.66Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---
        V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---

Query:  EEAEARLDRVEDEAECEEGSGGL
        + ++AR         C EGS G+
Subjt:  EEAEARLDRVEDEAECEEGSGGL

A0A5A7V9N3 Reverse transcriptase1.2e-1659.18Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein4.7e-1354.64Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIE
        V+KSNQKL+L   +     L++   D    +D +   L L   G +      PLSTLSVLRDNDAVVEIELPVPDTLP+S ES  S+SSTWLELY E
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIE

A0A5D3DR18 Gag/pol protein1.5e-1453.66Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---
        V+KSNQKL+LE DK         L      LDK+V           PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY ES   E+   
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESGSGEL---

Query:  EEAEARLDRVEDEAECEEGSGGL
        + ++AR         C EGS G+
Subjt:  EEAEARLDRVEDEAECEEGSGGL

A0A5D3DSY7 Putative Retrotransposon protein1.2e-1659.18Show/hide
Query:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        V+KSNQKL+L+ + G + K + +L           GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  VYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTC
GAATCAGAAGCTCCATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTAA
TTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGT
TCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGGTTCCGGCGAACTCGAGGAGGCTGAGGCACGACTGGATCGCGTCGAAGACGAGGCGGAGTGCGA
AGAGGGTTCTGGTGGACTCGACGAGGCTGAGGCGCAGCTGGATCGCGACAGAGACGAGGCGGAGAGGGCTGCGAGAAATCGCCGGCAAATTGGAGCGATGATGATAGAGT
GTCGTTGTGGTAGCAGTGCGTGGTGCAGGGAGTTTGTGCGGCAGGAGAGGAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTC
GAATCAGAAGCTCCATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTAA
TTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGT
TCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGGTTCCGGCGAACTCGAGGAGGCTGAGGCACGACTGGATCGCGTCGAAGACGAGGCGGAGTGCGA
AGAGGGTTCTGGTGGACTCGACGAGGCTGAGGCGCAGCTGGATCGCGACAGAGACGAGGCGGAGAGGGCTGCGAGAAATCGCCGGCAAATTGGAGCGATGATGATAGAGT
GTCGTTGTGGTAGCAGTGCGTGGTGCAGGGAGTTTGTGCGGCAGGAGAGGAGGTAG
Protein sequenceShow/hide protein sequence
MRSGWFLEWKTEHRIFEQTRRISGVLWCFEHSGVYKSNQKLHLEEDKGVTEKLESVLSDFGAFLDKLVGNLVLISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAES
SRSSSSTWLELYIESGSGELEEAEARLDRVEDEAECEEGSGGLDEAEAQLDRDRDEAERAARNRRQIGAMMIECRCGSSAWCREFVRQERR