; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001900 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001900
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionlight-regulated protein-like
Genome locationscaffold10:711930..714540
RNA-Seq ExpressionSpg001900
SyntenySpg001900
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588864.1 Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.5e-4872.61Show/hide
Query:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSL-SSRRSAIKATATVAYDTSVVDYSSAI--------------SVFPAEACETIGGEACWANIFPE
        MQAVLSIVVPPLLPS TPS N+SHFPSSP  SI SL SSRRS IKA   VAYDTSVVDYSS I               VFPAEACETIGGEACWANIFPE
Subjt:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSL-SSRRSAIKATATVAYDTSVVDYSSAI--------------SVFPAEACETIGGEACWANIFPE

Query:  VRLQPPADHNQTAVASLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF
        VRLQ  AD ++ A  +LEE+DREYL Y A S+TVFPGEACDDLGGEFC AEFLNG+F
Subjt:  VRLQPPADHNQTAVASLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF

XP_004145699.2 light-regulated protein, chloroplastic [Cucumis sativus]2.9e-4876.92Show/hide
Query:  MQAVLSIVVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEAC-WANIFPEVRLQPPADHNQTA
        MQAVLSI VP LLPS+   S   SHF   PLI+  S SSRRS+IKATA+V YDTSVVDYSSAISVFPAEACETIGGEAC W N+FPEVRLQ  + +NQ  
Subjt:  MQAVLSIVVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEAC-WANIFPEVRLQPPADHNQTA

Query:  VASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF
        VAS EE+DREYLDYADS+TVFPGEACDDLGGEFCE EFLNGVF
Subjt:  VASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF

XP_022928578.1 light-regulated protein-like [Cucurbita moschata]4.8e-5178.87Show/hide
Query:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVA
        MQAVLSIVVPPLLPS TPS N+SHFPSS        SSRRS IKA   VAYDTSVVDYSS ISVFPAEACETIGGEACWANIFPEVRLQ  AD ++ A  
Subjt:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVA

Query:  SLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF
        +LEE+DREYLDY A S+TVFPGEACDDLGGEFC AEFLNGVF
Subjt:  SLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF

XP_023531712.1 light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]7.4e-5281.82Show/hide
Query:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSL-SSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAV
        MQAVLSIVVPPLLPS TPS N+SHFPSSP  SI SL SSRRS IKA   VAYDTSVVDYSS ISVFPAEACETIGGEACWANIFPEVRLQ  AD  + A 
Subjt:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSL-SSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAV

Query:  ASLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF
         +LEE+DREYLDY A S+TVFPGEACDDLGGEFC AEFLNGVF
Subjt:  ASLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF

XP_038893926.1 light-regulated protein, chloroplastic-like [Benincasa hispida]2.0e-4978.72Show/hide
Query:  MQAVLSIVVPPLLPSTPSKNISHFPSS-PLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVA
        MQAVLSI VPPLLPST S N    PS  PLIS  S  SRRSAIKATA+V YD S+VDYSSAISVFPAEACETIGGEACWAN+FPEVR+QP  ++ + AVA
Subjt:  MQAVLSIVVPPLLPSTPSKNISHFPSS-PLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVA

Query:  SLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF
         LEE+DREYLDYADSRTVFPGEACDDLGGEFCE EFLN VF
Subjt:  SLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF

TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein1.4e-4876.92Show/hide
Query:  MQAVLSIVVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEAC-WANIFPEVRLQPPADHNQTA
        MQAVLSI VP LLPS+   S   SHF   PLI+  S SSRRS+IKATA+V YDTSVVDYSSAISVFPAEACETIGGEAC W N+FPEVRLQ  + +NQ  
Subjt:  MQAVLSIVVPPLLPST--PSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEAC-WANIFPEVRLQPPADHNQTA

Query:  VASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF
        VAS EE+DREYLDYADS+TVFPGEACDDLGGEFCE EFLNGVF
Subjt:  VASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEFLNGVF

A0A1S3BND3 light-regulated protein isoform X23.5e-4778.01Show/hide
Query:  AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVAS
        AVLSI VP LLPS+   N SH    P I+ GS SSR SAIKATA+V YDTSVVDYSSAISVFPAEACETIGGEA CWAN+FPEVRLQP  ++NQ  AVA+
Subjt:  AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVAS

Query:  LEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF
        LEE+DREYLDY ADS+TVF GEACDDLGGEFCEAEFLNGVF
Subjt:  LEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF

A0A1S4DXW1 light-regulated protein isoform X33.5e-4778.01Show/hide
Query:  AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVAS
        AVLSI VP LLPS+   N SH    P I+ GS SSR SAIKATA+V YDTSVVDYSSAISVFPAEACETIGGEA CWAN+FPEVRLQP  ++NQ  AVA+
Subjt:  AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVAS

Query:  LEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF
        LEE+DREYLDY ADS+TVF GEACDDLGGEFCEAEFLNGVF
Subjt:  LEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF

A0A5A7VMP8 Light-regulated protein isoform X25.4e-4878.72Show/hide
Query:  AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVAS
        AVLSI VP LLPS+   N SH    P I+ GS SSRRSAIKATA+V YDTSVVDYSSAISVFPAEACETIGGEA CWAN+FPEVRLQP  ++NQ  AVA+
Subjt:  AVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEA-CWANIFPEVRLQPPADHNQT-AVAS

Query:  LEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF
        LEE+DREYLDY ADS+TVF GEACDDLGGEFCEAEFLNGVF
Subjt:  LEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF

A0A6J1EPG4 light-regulated protein-like2.3e-5178.87Show/hide
Query:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVA
        MQAVLSIVVPPLLPS TPS N+SHFPSS        SSRRS IKA   VAYDTSVVDYSS ISVFPAEACETIGGEACWANIFPEVRLQ  AD ++ A  
Subjt:  MQAVLSIVVPPLLPS-TPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVA

Query:  SLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF
        +LEE+DREYLDY A S+TVFPGEACDDLGGEFC AEFLNGVF
Subjt:  SLEEVDREYLDY-ADSRTVFPGEACDDLGGEFCEAEFLNGVF

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic7.0e-2155.56Show/hide
Query:  RRSAIK---ATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEA
        RR A++   A A VA + + VDYSS ISVFP EAC+ IGGEAC   ++PE +L   A     + A+ EEVDR+YL Y +  TVFP EACDDLGGEFC+A
Subjt:  RRSAIK---ATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEA

Q96500 Light-regulated protein 1, chloroplastic2.8e-1743.97Show/hide
Query:  MQAVLSIVVPPLLP-----STPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAI-SVFPAEACETIGGEACWANIFPEVRLQPPADHN
        MQ  L I    LLP     S+P        ++    + SL S  S+  +++++  D + VDY+S+I SVFPAEACE I G AC A+I+PEV+L       
Subjt:  MQAVLSIVVPPLLP-----STPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAI-SVFPAEACETIGGEACWANIFPEVRLQPPADHN

Query:  QTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEF
          A    E VDREY +Y   +TVF  EACDDLGGEFCE +F
Subjt:  QTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEF

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like2.0e-1843.97Show/hide
Query:  MQAVLSIVVPPLLP-----STPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAI-SVFPAEACETIGGEACWANIFPEVRLQPPADHN
        MQ  L I    LLP     S+P        ++    + SL S  S+  +++++  D + VDY+S+I SVFPAEACE I G AC A+I+PEV+L       
Subjt:  MQAVLSIVVPPLLP-----STPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAI-SVFPAEACETIGGEACWANIFPEVRLQPPADHN

Query:  QTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEF
          A    E VDREY +Y   +TVF  EACDDLGGEFCE +F
Subjt:  QTAVASLEEVDREYLDYADSRTVFPGEACDDLGGEFCEAEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTC
GCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTG
GAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGAT
TACGCCGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCTGTTCTTAGCATTGTTGTTCCTCCCCTTCTCCCCTCAACACCTTCCAAGAACATTTCTCACTTTCCCTCTTCTCCCTTGATCTCAATTGGCTCTCTCTCCTC
GCGTCGCTCGGCAATCAAAGCAACCGCGACGGTCGCCTACGACACTTCGGTGGTTGATTACAGCTCCGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAAACCATCGGTG
GAGAAGCGTGTTGGGCTAATATTTTTCCAGAAGTGAGGCTTCAGCCTCCTGCAGATCACAATCAAACAGCCGTAGCTTCTTTGGAGGAGGTTGATAGAGAGTATCTCGAT
TACGCCGATTCGAGGACCGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAAGCCGAGTTTCTAAATGGCGTTTTCTAA
Protein sequenceShow/hide protein sequence
MQAVLSIVVPPLLPSTPSKNISHFPSSPLISIGSLSSRRSAIKATATVAYDTSVVDYSSAISVFPAEACETIGGEACWANIFPEVRLQPPADHNQTAVASLEEVDREYLD
YADSRTVFPGEACDDLGGEFCEAEFLNGVF