; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001902 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001902
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:31855898..31861136
RNA-Seq ExpressionSpg001902
SyntenySpg001902
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.2e-1542.25Show/hide
Query:  KFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEV
        K   NY+   E+D+       T      + +T        L+ A +E+++Q           F+RLS+STSKK RPSTS F RLK+T+DQ +R+M +L+ 
Subjt:  KFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEV

Query:  KLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        K F + N D K++S VPSRMKRK SV INTEGSL V   F++
Subjt:  KLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-1442.75Show/hide
Query:  NYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEVKLFD
        NY+   E+D+       T      + +T        L+ A +E+++Q          TF+RLS+STSKK RPSTS F RLK+T+DQ +R+M  L+ K F 
Subjt:  NYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEVKLFD

Query:  QVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        + N D K++S VPSRMKRK SV INTEGSL +   F++
Subjt:  QVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-1439.38Show/hide
Query:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY
        T+  A     +   Y + K + N N + +  SD   I  + TR+              L+ A +E+++Q          TF+RLS+STSKK RPSTS F 
Subjt:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY

Query:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        RLK+T+DQ +R+M + + K F + N D K++S VPS MKRK SV INTEGSL V   F++
Subjt:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

TYK14888.1 gag protease polyprotein [Cucumis melo var. makuwa]2.7e-1439.38Show/hide
Query:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY
        T+  A     +   Y + K + N N + +  S    I  + TR+              L+ A +E+++Q          TF+RLS+STSKK RPSTS F 
Subjt:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY

Query:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        RLK+T+DQ +R+M + + K F + N D K++S VPSRMKRK SV INTEGSL V   F++
Subjt:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

TYK19713.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-1460.49Show/hide
Query:  TFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        TF+RLS+STSKK RPSTS F RLK+T+DQ +R+M + + K F + N D K++S VPSRMKRK SV INTEGSL V   F++
Subjt:  TFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein4.5e-1542.25Show/hide
Query:  KFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEV
        K   NY+   E+D+       T      + +T        L+ A +E+++Q           F+RLS+STSKK RPSTS F RLK+T+DQ +R+M +L+ 
Subjt:  KFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEV

Query:  KLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        K F + N D K++S VPSRMKRK SV INTEGSL V   F++
Subjt:  KLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

A0A5A7VAV4 Retrotransposon gag protein1.3e-1439.38Show/hide
Query:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY
        T+  A     +   Y + K + N N + +  SD   I  + TR+              L+ A +E+++Q          TF+RLS+STSKK RPSTS F 
Subjt:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY

Query:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        RLK+T+DQ +R+M + + K F + N D K++S VPS MKRK SV INTEGSL V   F++
Subjt:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

A0A5D3CD55 Ty3-gypsy retrotransposon protein1.3e-1439.38Show/hide
Query:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY
        T+  A     +   Y + K + N N + +  S    I  + TR+              L+ A +E+++Q          TF+RLS+STSKK RPSTS F 
Subjt:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY

Query:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        RLK+T+DQ +R+M + + K F + N D K++S VPSRMKRK SV INTEGSL V   F++
Subjt:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

A0A5D3CUI5 Gag protease polyprotein1.3e-1439.38Show/hide
Query:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY
        T+  A     +   Y + K + N N + +  S    I  + TR+              L+ A +E+++Q          TF+RLS+STSKK RPSTS F 
Subjt:  TSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQ-----IEHLKTFQRLSVSTSKKSRPSTSVFY

Query:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        RLK+T+DQ +R+M + + K F + N D K++S VPSRMKRK SV INTEGSL V   F++
Subjt:  RLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

A0A5D3D881 Gag protease polyprotein7.6e-1560.49Show/hide
Query:  TFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV
        TF+RLS+STSKK RPSTS F RLK+T+DQ +R+M + + K F + N D K++S VPSRMKRK SV INTEGSL V   F++
Subjt:  TFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAGACTTCTATCGTTGCAGGCCAAGAAACAACCTTACAGGGGGCATATACTAATGACAA
GTTTATTGGTAACTATAACCCTTTGTTTGAACTTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGGACTATGGAACAAAGAATGACTGAGATGCAGGAGCACA
TTAACACCTTGACAAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGACTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCT
GTTTTTTATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATCAAGTAAACAGCGACAAGAAGCTTTATAGTAGCGT
CCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTCACGCACTTCGTTGTAGTTCCTTCTCTCCGAGTTCGAAGGTTTTCGC
ACGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAGGGTTCTTACACTATACGCTACTACATTGCTC
CTTCTCCAAGTCCGAAGGTTTGCGCGTTTTGTTATGATGCTTCGCTGTTGTTCCTTCCCCAAGTTTGAAGGTTCTAAGGCTATGCCTGCGCTACTTCCTTCTTTAAGTTT
GAAAGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGTCGTTGCACTGTTGCGTTGCTTCCTTCTCAAAATTCGAAGGTTCTCACGCTGCT
TCACTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCCGTTTTCCTTCCTCCAAGTTCGAAGGTTCTTACGTAGTTTCATTGCAGTTCCTTCTTCCAAGATCGAAGGTTCT
GATGCTGCGCGCTTCCTTCTCCAAGTTCTTACGTTGCATGATGTTGTGTTGATCCTTCTCCAAATTCGAAGATTCTCACGCTATGCGGTTTTGCTTGTGTTCCTTCGAGC
TTGCGTTCCTTCTCCAAGTTCGAAGGTTCTCATGCGCTACTCTATTGTTCCTTCTCCATGTTCGAAGGTTTCACTTGTTCTCATGTTGCTTCGCTACAGCTCCAGTTCCT
TCTCACCAAGTTCGAGGGTTCTTGCGCTGTACGCTACTGTGTTGTTCCCTCTTCTTCAAGTTCGAACGTTTTCACGCTGCTTCGCTGCCATTCCTTCTCCCCAAGTACGA
AGGTTCTCCGTTGCACGCTCCTGCGTTGCTCCTTCCCCAAGTCTGAAGGTTCTCACGTTGCGCTGTTGTGCTCCTTCCTTCTCGTATTTCGAAGATTCTGACGTTGCGCT
GCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGTGCTGCTACACTGCTTCCTTCCTCCAAGTTTTTAAGTT
CTCAAACTGCTTCGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAGACTTCTATCGTTGCAGGCCAAGAAACAACCTTACAGGGGGCATATACTAATGACAA
GTTTATTGGTAACTATAACCCTTTGTTTGAACTTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGGACTATGGAACAAAGAATGACTGAGATGCAGGAGCACA
TTAACACCTTGACAAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGACTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCT
GTTTTTTATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATCAAGTAAACAGCGACAAGAAGCTTTATAGTAGCGT
CCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTCACGCACTTCGTTGTAGTTCCTTCTCTCCGAGTTCGAAGGTTTTCGC
ACGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAGGGTTCTTACACTATACGCTACTACATTGCTC
CTTCTCCAAGTCCGAAGGTTTGCGCGTTTTGTTATGATGCTTCGCTGTTGTTCCTTCCCCAAGTTTGAAGGTTCTAAGGCTATGCCTGCGCTACTTCCTTCTTTAAGTTT
GAAAGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGTCGTTGCACTGTTGCGTTGCTTCCTTCTCAAAATTCGAAGGTTCTCACGCTGCT
TCACTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCCGTTTTCCTTCCTCCAAGTTCGAAGGTTCTTACGTAGTTTCATTGCAGTTCCTTCTTCCAAGATCGAAGGTTCT
GATGCTGCGCGCTTCCTTCTCCAAGTTCTTACGTTGCATGATGTTGTGTTGATCCTTCTCCAAATTCGAAGATTCTCACGCTATGCGGTTTTGCTTGTGTTCCTTCGAGC
TTGCGTTCCTTCTCCAAGTTCGAAGGTTCTCATGCGCTACTCTATTGTTCCTTCTCCATGTTCGAAGGTTTCACTTGTTCTCATGTTGCTTCGCTACAGCTCCAGTTCCT
TCTCACCAAGTTCGAGGGTTCTTGCGCTGTACGCTACTGTGTTGTTCCCTCTTCTTCAAGTTCGAACGTTTTCACGCTGCTTCGCTGCCATTCCTTCTCCCCAAGTACGA
AGGTTCTCCGTTGCACGCTCCTGCGTTGCTCCTTCCCCAAGTCTGAAGGTTCTCACGTTGCGCTGTTGTGCTCCTTCCTTCTCGTATTTCGAAGATTCTGACGTTGCGCT
GCTTCCTTCACCAAGTTCGAAGGTTCTGACGTTGTGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGTGCTGCTACACTGCTTCCTTCCTCCAAGTTTTTAAGTT
CTCAAACTGCTTCGTTGTAG
Protein sequenceShow/hide protein sequence
MGSTAHCCFNELTLQEDKTSIVAGQETTLQGAYTNDKFIGNYNPLFELDSDVVTIMMTETRTMEQRMTEMQEHINTLTKAIEEKDSQIEHLKTFQRLSVSTSKKSRPSTS
VFYRLKVTSDQPKRKMDNLEVKLFDQVNSDKKLYSSVPSRMKRKFSVLINTEGSLKVLTHFVVVPSLRVRRFSHASLQFLLSKFEGSHALRCSSFSPSSRVLTLYATTLL
LLQVRRFARFVMMLRCCSFPKFEGSKAMPALLPSLSLKVPTLRCCAASFSKFEGSVVALLRCFLLKIRRFSRCFTVVPSPSSKVLPFSFLQVRRFLRSFIAVPSSKIEGS
DAARFLLQVLTLHDVVLILLQIRRFSRYAVLLVFLRACVPSPSSKVLMRYSIVPSPCSKVSLVLMLLRYSSSSFSPSSRVLALYATVLFPLLQVRTFSRCFAAIPSPQVR
RFSVARSCVAPSPSLKVLTLRCCAPSFSYFEDSDVALLPSPSSKVLTLCCFLLQVRRFSYCAATLLPSSKFLSSQTASL