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Spg001939 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001939
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold10:4448472..4452573
RNA-Seq ExpressionSpg001939
SyntenySpg001939
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.6e-1345.45Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE
        ++ IGSLIQFG+ EP++++S PE   N+    D  +E+ +Q+++ + GWTLVTRRK RKQ++ QKES  +R ++ K + +R+N +K  R+  PI+EESE
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.1e-3151.25Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SR G+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+D    R+   DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]2.6e-1345.45Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE
        ++ IGSLIQFG+ EP++++S PE   N+    D  +E+ +Q+++ + GWTLVTRRK RKQ++ QKES  +R ++ K + +R+N +K  R+  PI+EESE
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]2.1e-3151.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+     R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]9.6e-3251.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY S EPVRIT KGK KVA+T HITVEE  DSE+ K+D    R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]9.0e-0640.24Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRK
        ++ IGSLIQFG+ EP++++S  +   N+    D  +E+ +Q+++ + GWTLVTRR  RKQ++ QKES  +R ++ K   R +
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRK

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]2.1e-3151.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+     R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]2.1e-3151.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+     R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]2.6e-1345.45Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE
        ++ IGSLIQFG+ EP++++S PE   N+    D  +E+ +Q+++ + GWTLVTRRK RKQ++ QKES  +R ++ K + +R+N +K  R+  PI+EESE
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H1.3e-1345.45Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE
        ++ IGSLIQFG+ EP++++S PE   N+    D  +E+ +Q+++ + GWTLVTRRK RKQ++ QKES  +R ++ K + +R+N +K  R+  PI+EESE
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE

A0A5A7TZU9 Ribonuclease H1.0e-3151.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+     R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

A0A5D3BIH8 Uncharacterized protein1.3e-1345.45Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE
        ++ IGSLIQFG+ EP++++S PE   N+    D  +E+ +Q+++ + GWTLVTRRK RKQ++ QKES  +R ++ K + +R+N +K  R+  PI+EESE
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE

A0A5D3BIH8 Uncharacterized protein1.0e-3151.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+     R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

A0A5D3C783 Ribonuclease H4.6e-3251.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY S EPVRIT KGK KVA+T HITVEE  DSE+ K+D    R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

A0A5D3C783 Ribonuclease H4.4e-0640.24Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRK
        ++ IGSLIQFG+ EP++++S  +   N+    D  +E+ +Q+++ + GWTLVTRR  RKQ++ QKES  +R ++ K   R +
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRK

A0A5D3C783 Ribonuclease H1.0e-3151.88Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SRAG+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+     R+S  DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

A0A5D3D1E5 Ribonuclease H1.3e-1345.45Show/hide
Query:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE
        ++ IGSLIQFG+ EP++++S PE   N+    D  +E+ +Q+++ + GWTLVTRRK RKQ++ QKES  +R ++ K + +R+N +K  R+  PI+EESE
Subjt:  MADIGSLIQFGTFEPIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESE

A0A5D3D1E5 Ribonuclease H1.0e-3151.25Show/hide
Query:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP
        +P L  ++KKLQK+GY+IP SR G+GY+S EPVRIT KGKAKVA+T HITVEE  DSE+ K+D    R+   DRI  S  R SVFQR+ST+  +D +Q  
Subjt:  KPILEESEKKLQKEGYAIPISRAGLGYKSPEPVRITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHP

Query:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT
        T  STR S FQRL+ ++++  ++  TPTTR SAF+RLSV+  R ++++ +  SN +  +T
Subjt:  TYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKRSEEQSPILASNITETIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGATTGAAGCTCTCTGCAAGATCCTGAAGATTGAAGCTCCAATCCTCCTACAAGACTTTGAAGACCAAAACCTAGATTTTCCTGCAAGCTTGAAGATTGAAGTGAAGTC
ATCTAAAAGACTGACTGAAGACCTGAAGCCAGAAGTCTACTTCAATCATCCAGGAGAATCCTTCAAAGAGCCAAATCAAGGCGGAATGATCATCCAAGAAAATCCTTTAT
TTGGCTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGATATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGAAGCTTAATCCAATTTGGTACCTTTGAA
CCTATTATCGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCTCTACGAAGATGATATTCAAGAAAAGATTAGACAAATTGAAGACGAAGATGGAGGCTGGACACT
CGTAACACGACGGAAGAACCGAAAGCAAAATTGGGTTCAGAAGGAATCTCGTTTGTTTCGAGAACACAAAAGAAAAAGCAGGCCTCGAAGGAAAAATGGGAAGAAGTACA
TGAGAAGGCTCAAGCCTATCTTAGAAGAAAGTGAGAAGAAACTTCAAAAAGAGGGTTATGCTATACCCATTTCAAGAGCTGGTCTTGGATATAAATCTCCTGAGCCGGTT
CGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACACTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAGACGAAATAGATCATAGAACTTC
TGCACTTGATCGCATTGGACCGTCGGTTACACGATCCTCGGTTTTTCAAAGACTGAGTACAGCTGCAATAGAAGATGAAAGTCAGCATCCAACTTATGGCTCCACACGAC
CTTCGGTCTTCCAAAGGCTGAGTATGGCTTCTGAGGAAAAAGGGAACGTGCATTCAACCCCTACTACACGACTATCAGCTTTCCAAAGGTTGAGCGTAGCCACAAAAAGG
AGTGAAGAACAATCTCCTATATTAGCCTCAAACATAACAGAGACTATTACCAAGGCAAAA
mRNA sequenceShow/hide mRNA sequence
AAGATTGAAGCTCTCTGCAAGATCCTGAAGATTGAAGCTCCAATCCTCCTACAAGACTTTGAAGACCAAAACCTAGATTTTCCTGCAAGCTTGAAGATTGAAGTGAAGTC
ATCTAAAAGACTGACTGAAGACCTGAAGCCAGAAGTCTACTTCAATCATCCAGGAGAATCCTTCAAAGAGCCAAATCAAGGCGGAATGATCATCCAAGAAAATCCTTTAT
TTGGCTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGATATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGAAGCTTAATCCAATTTGGTACCTTTGAA
CCTATTATCGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCTCTACGAAGATGATATTCAAGAAAAGATTAGACAAATTGAAGACGAAGATGGAGGCTGGACACT
CGTAACACGACGGAAGAACCGAAAGCAAAATTGGGTTCAGAAGGAATCTCGTTTGTTTCGAGAACACAAAAGAAAAAGCAGGCCTCGAAGGAAAAATGGGAAGAAGTACA
TGAGAAGGCTCAAGCCTATCTTAGAAGAAAGTGAGAAGAAACTTCAAAAAGAGGGTTATGCTATACCCATTTCAAGAGCTGGTCTTGGATATAAATCTCCTGAGCCGGTT
CGAATCACAAGAAAAGGGAAAGCGAAAGTTGCAGATACACTTCACATTACAGTGGAAGAAATCGATGATTCCGAACAGGCTAAAGAAGACGAAATAGATCATAGAACTTC
TGCACTTGATCGCATTGGACCGTCGGTTACACGATCCTCGGTTTTTCAAAGACTGAGTACAGCTGCAATAGAAGATGAAAGTCAGCATCCAACTTATGGCTCCACACGAC
CTTCGGTCTTCCAAAGGCTGAGTATGGCTTCTGAGGAAAAAGGGAACGTGCATTCAACCCCTACTACACGACTATCAGCTTTCCAAAGGTTGAGCGTAGCCACAAAAAGG
AGTGAAGAACAATCTCCTATATTAGCCTCAAACATAACAGAGACTATTACCAAGGCAAAA
Protein sequenceShow/hide protein sequence
KIEALCKILKIEAPILLQDFEDQNLDFPASLKIEVKSSKRLTEDLKPEVYFNHPGESFKEPNQGGMIIQENPLFGYSTSSSEQAKEISDPDVMSVMMADIGSLIQFGTFE
PIIVWSQPEAPGNDFLYEDDIQEKIRQIEDEDGGWTLVTRRKNRKQNWVQKESRLFREHKRKSRPRRKNGKKYMRRLKPILEESEKKLQKEGYAIPISRAGLGYKSPEPV
RITRKGKAKVADTLHITVEEIDDSEQAKEDEIDHRTSALDRIGPSVTRSSVFQRLSTAAIEDESQHPTYGSTRPSVFQRLSMASEEKGNVHSTPTTRLSAFQRLSVATKR
SEEQSPILASNITETITKAK