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Spg001950 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001950
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:32024835..32038306
RNA-Seq ExpressionSpg001950
SyntenySpg001950
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]5.8e+0044.83Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N +K  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]8.6e-2850.94Show/hide
Query:  RTVKSTTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPT
        R+  S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K++   R+S FDRI  S  R SVFQR++T   +  +Q  T
Subjt:  RTVKSTTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPT

Query:  YGSTRPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
          STR SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  YGSTRPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]1.3e-2852.26Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   VQIT KGKAKV +  HIT+EE  DS+E K++   R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+   ++  ++  T TTR SAF+RLSV+  KGQ+ + ISVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]3.4e+0046.55Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N KK  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]8.6e-2851.61Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K+    R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]5.8e+0044.83Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N +K  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]8.6e-2851.61Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K+    R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]8.6e-2851.61Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K+    R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]5.8e+0044.83Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N +K  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H2.8e+0044.83Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N +K  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

A0A5A7TZU9 Ribonuclease H4.2e-2851.61Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K+    R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

A0A5A7VE63 Uncharacterized protein6.4e-2952.26Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   VQIT KGKAKV +  HIT+EE  DS+E K++   R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+   ++  ++  T TTR SAF+RLSV+  KGQ+ + ISVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

A0A5A7VE63 Uncharacterized protein1.6e+0046.55Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N KK  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

A0A5A7VE63 Uncharacterized protein4.2e-2851.61Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K+    R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

A0A5D3BIH8 Uncharacterized protein2.8e+0044.83Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N +K  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

A0A5D3BIH8 Uncharacterized protein4.2e-2851.61Show/hide
Query:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST
        S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K+    R+S FDRI  S  R SVFQR++T+  +  +Q  T  ST
Subjt:  STTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGST

Query:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
        R SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  RPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

A0A5D3D1E5 Ribonuclease H2.8e+0044.83Show/hide
Query:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF
        K RKQ++ QKES  ++ ++ KG+ +R+N +K  RK  PI+EESE   +   PI LK+F
Subjt:  KNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEF

A0A5D3D1E5 Ribonuclease H4.2e-2850.94Show/hide
Query:  RTVKSTTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPT
        R+  S T+KKLQK+GY+IP  RAG+GY+S   V+IT KGKAKV +  HITVEE  DSEE K++   R+S FDRI  S  R SVFQR++T   +  +Q  T
Subjt:  RTVKSTTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKENIDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPT

Query:  YGSTRPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT
          STR SAFQRL+ + ++  ++  TPTTR SAF+RLSV+  + Q+ + +SVSN +   T
Subjt:  YGSTRPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATGGACCCAAATGGCAGAGCCAAATCAAAGCGGGATGGTCATCCAAGAAAATCCTCTATTTGGCTATTCTACATCATCTTCTGAGCAGGCAAAGGAGACATCAGA
TCCTGGCGTGAGGTATGTAATGATGGCTGACATAGGTACTGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGGAAGAAATTTGCTGAAGAAAATATGCTTCAACCTTA
AGGAATTGCTGCCAAAATCATCTCTCACCATAACCCACTTCCATAGCTTGTTCTTCAAGCTTTTCCCATCAAAATCCATCATTAGAGAATCCCACAATCCGTTCCAAAGA
CTTGAGGATAGCAAGGAAGATCAAGTGGTGAAGAACCGAAAGCAAAATTGGGTTCAGAAGGAATCTCGTTTGTTTCAAGAACACAAAAGAAAAGGCAGGCTTCGAAGGAA
AAATGGGAAGAAGTATACGAGAAAGCTCAAGCCTATCTTAGAGGAAAGTGAGGAGCATATCCAACATCCACATCCAATAACTCTAAAAGAATTCTTGATGGAAGAGATTG
TCGAGAACACTAGACCTAATTGGTCTAGGACACTTGACACTCTTGCTCTTGCTCTTAGACTCTCAAAGACAAGACCTAGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGA
CTCCCACAAGTCTTTTGCCTCCTAGACTTAGAGACATACCGGTGTAACCTCTGTGGTTATTGTGTCATTCAAAGGAGAAATTTCCAGCGATCACAAGAAAAGGAGGCTGT
TGCGTTTTCGTTCGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGAAGAAACTTCAAAAAGAGGGTTATGCTATACCCATTTTAAGAGCTGGTCTTGGAT
ATAAATCTCTTGCGACAGTTCAAATCACAAGAAAAGGGAAAGCGAAAGTTGTAGATATGCTTCACATTACAGTGGAAGAAATTGATGATTCTGAAGAAGCTAAAGAAAAC
ATAGATCATAGAACTTCTGCATTTGATCGCATTGGATCGTCTTTTACACGATTCTCGGTTTTTCAAAGGCTGACTACAACTGCAAGAGAAGGCGGAAGTCAGCGTCCAAC
TTATGGCTCCACACGACCTTCGGCTTTCCAAAGGCTGAGTATGGCTTATGAAGAAAAAGGAAACGTGCATTCAACCCCTACTACACGGTTGTCTGCTTTTCAAAGGTTGA
GTGTAACCACCAAAAAGGGTCAAGAAGGGTCCTTTATATCAGTTTCTAACATAACAAAAACTACTACCAAGGCAAAAGGCTTTGCATGCTATGTGAGTTTGATCTCGAAA
GGGACAAACGATATCGGTTCTCATAAAGGTGATATAGGAGAAAAAGCTCGAAAGAGATTGTTCGGCGGTATAGGGCAAGCTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATATGGACCCAAATGGCAGAGCCAAATCAAAGCGGGATGGTCATCCAAGAAAATCCTCTATTTGGCTATTCTACATCATCTTCTGAGCAGGCAAAGGAGACATCAGA
TCCTGGCGTGAGGTATGTAATGATGGCTGACATAGGTACTGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGGAAGAAATTTGCTGAAGAAAATATGCTTCAACCTTA
AGGAATTGCTGCCAAAATCATCTCTCACCATAACCCACTTCCATAGCTTGTTCTTCAAGCTTTTCCCATCAAAATCCATCATTAGAGAATCCCACAATCCGTTCCAAAGA
CTTGAGGATAGCAAGGAAGATCAAGTGGTGAAGAACCGAAAGCAAAATTGGGTTCAGAAGGAATCTCGTTTGTTTCAAGAACACAAAAGAAAAGGCAGGCTTCGAAGGAA
AAATGGGAAGAAGTATACGAGAAAGCTCAAGCCTATCTTAGAGGAAAGTGAGGAGCATATCCAACATCCACATCCAATAACTCTAAAAGAATTCTTGATGGAAGAGATTG
TCGAGAACACTAGACCTAATTGGTCTAGGACACTTGACACTCTTGCTCTTGCTCTTAGACTCTCAAAGACAAGACCTAGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGA
CTCCCACAAGTCTTTTGCCTCCTAGACTTAGAGACATACCGGTGTAACCTCTGTGGTTATTGTGTCATTCAAAGGAGAAATTTCCAGCGATCACAAGAAAAGGAGGCTGT
TGCGTTTTCGTTCGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGAAGAAACTTCAAAAAGAGGGTTATGCTATACCCATTTTAAGAGCTGGTCTTGGAT
ATAAATCTCTTGCGACAGTTCAAATCACAAGAAAAGGGAAAGCGAAAGTTGTAGATATGCTTCACATTACAGTGGAAGAAATTGATGATTCTGAAGAAGCTAAAGAAAAC
ATAGATCATAGAACTTCTGCATTTGATCGCATTGGATCGTCTTTTACACGATTCTCGGTTTTTCAAAGGCTGACTACAACTGCAAGAGAAGGCGGAAGTCAGCGTCCAAC
TTATGGCTCCACACGACCTTCGGCTTTCCAAAGGCTGAGTATGGCTTATGAAGAAAAAGGAAACGTGCATTCAACCCCTACTACACGGTTGTCTGCTTTTCAAAGGTTGA
GTGTAACCACCAAAAAGGGTCAAGAAGGGTCCTTTATATCAGTTTCTAACATAACAAAAACTACTACCAAGGCAAAAGGCTTTGCATGCTATGTGAGTTTGATCTCGAAA
GGGACAAACGATATCGGTTCTCATAAAGGTGATATAGGAGAAAAAGCTCGAAAGAGATTGTTCGGCGGTATAGGGCAAGCTGCCTAA
Protein sequenceShow/hide protein sequence
MIWTQMAEPNQSGMVIQENPLFGYSTSSSEQAKETSDPGVRYVMMADIGTGEERMAELERKGRNLLKKICFNLKELLPKSSLTITHFHSLFFKLFPSKSIIRESHNPFQR
LEDSKEDQVVKNRKQNWVQKESRLFQEHKRKGRLRRKNGKKYTRKLKPILEESEEHIQHPHPITLKEFLMEEIVENTRPNWSRTLDTLALALRLSKTRPRILSSLPLRER
LPQVFCLLDLETYRCNLCGYCVIQRRNFQRSQEKEAVAFSFVERRWRRTVKSTTKKKLQKEGYAIPILRAGLGYKSLATVQITRKGKAKVVDMLHITVEEIDDSEEAKEN
IDHRTSAFDRIGSSFTRFSVFQRLTTTAREGGSQRPTYGSTRPSAFQRLSMAYEEKGNVHSTPTTRLSAFQRLSVTTKKGQEGSFISVSNITKTTTKAKGFACYVSLISK
GTNDIGSHKGDIGEKARKRLFGGIGQAA