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Spg001954 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001954
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:4190462..4191766
RNA-Seq ExpressionSpg001954
SyntenySpg001954
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO72757.1 hypothetical protein CCACVL1_17615 [Corchorus capsularis]6.5e-1435Show/hide
Query:  SNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLW
        S PIA WSPP V  WK+N+DAA  ++  + G+G + R+ EG  + +  + +    +     L+AI  GL+ A S G L  V+ESDC +A+  IN  ++ +
Subjt:  SNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLW

Query:  SDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYA
         + +  V SI  L   F  + F    R+ N  AH +A++A
Subjt:  SDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYA

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]6.5e-1431.9Show/hide
Query:  MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKM
        ++  +  R+S    P+  W PP    +K+N D A      + GVGV+ RN  G  M AC R I     A   EL A  EGL+ A+ +G    V+E D + 
Subjt:  MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKM

Query:  AVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW
         ++ I             +E +  L+  F  +  +  PR  NKVAH +A++A  F CN+  TW
Subjt:  AVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.7e-1430.82Show/hide
Query:  RDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAV
        +D S+++S  S+    WS P   F KLN DAA   +P  +G   I R+ +G+  +    SID      + E + + +GL+    +   +++V+SDC  A+
Subjt:  RDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAV

Query:  DFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW
        D         S    W+E IW +   F  I+F   PR+ NK+A  +A+  R    ND W
Subjt:  DFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW

XP_042962749.1 uncharacterized protein LOC122297028 [Carya illinoinensis]1.0e-1430.26Show/hide
Query:  SRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKA
        SR++  +  W PP     K+N D A        G+G++ R+ EG  ++ C++       +  +E  A+  GL+  L  G  +LV+ESDC   ++ +N  +
Subjt:  SRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKA

Query:  TLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW
           SD    ++ I  +   F +ISF    R  N VAHG+AR+AR+      W
Subjt:  TLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW

XP_042974894.1 uncharacterized protein LOC122306534 [Carya illinoinensis]8.5e-1430.57Show/hide
Query:  VSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDF
        + ++ +RE   +  W PP     K+N D A  ++    GVGV+ R++ G  ++AC++S        I+E  A+  GL+  L  G  ++++E+DC   V  
Subjt:  VSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDF

Query:  INGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW
        +N  +   ++    +  I  LM  F +ISF    R  N VAH +A+YAR+     TW
Subjt:  INGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW

TrEMBL top hitse value%identityAlignment
A0A1R3HQR7 Ribonuclease H3.1e-1435Show/hide
Query:  SNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLW
        S PIA WSPP V  WK+N+DAA  ++  + G+G + R+ EG  + +  + +    +     L+AI  GL+ A S G L  V+ESDC +A+  IN  ++ +
Subjt:  SNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLW

Query:  SDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYA
         + +  V SI  L   F  + F    R+ N  AH +A++A
Subjt:  SDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYA

A0A251QGB9 RNase H domain-containing protein (Fragment)1.2e-1331.9Show/hide
Query:  MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKM
        +T  +  R+S    P+  W PP    +K+N D A      + GVGV+ RN  G  M AC R I     A   EL A  EGL+ A+ +G    ++E D + 
Subjt:  MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKM

Query:  AVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW
         ++ I          +  +E +  L+  F  +     PR  NKVAH +A++A  F CN+  TW
Subjt:  AVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW

A0A2I4FLN6 uncharacterized protein LOC1090001955.3e-1434.97Show/hide
Query:  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAW
        W PP   F KLN D A   +   +G+GV+ R++ G  ++A  +  D   E   +EL A+  GL+  LSLG   LVVESDC + V  +       S     
Subjt:  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAW

Query:  VESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW
        ++ +  LM  F + S +   RD N VAH +ARYA +      W
Subjt:  VESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW

A0A5E4FZN9 PREDICTED: retrotransposon3.1e-1431.9Show/hide
Query:  MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKM
        ++  +  R+S    P+  W PP    +K+N D A      + GVGV+ RN  G  M AC R I     A   EL A  EGL+ A+ +G    V+E D + 
Subjt:  MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKM

Query:  AVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW
         ++ I             +E +  L+  F  +  +  PR  NKVAH +A++A  F CN+  TW
Subjt:  AVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND--TW

A0A6P6UE91 uncharacterized protein LOC1137101302.0e-1332.47Show/hide
Query:  RESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFING
        +++  S+    W PP     KLN+DAA  +N   TG+GV+ RN EG  M   AR+     E  + E  AI  G++ A       + ++SDCK  VD IN 
Subjt:  RESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFING

Query:  KATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW
        K    ++    +E I  +   F   +F    RD N+ AH +A++A     N  W
Subjt:  KATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-1129.73Show/hide
Query:  ESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATL
        E N    W  P   + K N+DA      P  G+G I RN+ G  +   AR++         EL A+   +         R++ ESD +  V+ +N     
Subjt:  ESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATL

Query:  WSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND
        W   +  +E I  L+  F ++ F+  PR  NKVA  IAR + SF   D
Subjt:  WSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCND

AT4G29090.1 Ribonuclease H-like superfamily protein2.3e-0924.09Show/hide
Query:  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAW
        W PP   + K N+DA    +    G+G + RN++G      AR++         EL A+   +          ++ ESD ++ ++ +N    +W   +  
Subjt:  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAW

Query:  VESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSF
        ++ +  L+  F ++ F   PR+ N +A  +AR + SF
Subjt:  VESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSF

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0624.83Show/hide
Query:  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAW
        WSPP  D  K N DA+  E   ++G+G I RN +G  +          +     E   +   ++ +   G  +++ E D +     IN K++     + +
Subjt:  WSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAW

Query:  VESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTWGL
        +++I + +P F  I F    R+ N  A  +A+ A   + N  W L
Subjt:  VESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTWGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGA
AAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGC
TTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACA
TTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGG
TATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAA
ACCCTACACCAAACGACCCCTTAGGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGA
AAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGC
TTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACA
TTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGG
TATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAA
ACCCTACACCAAACGACCCCTTAGGGAATTGA
Protein sequenceShow/hide protein sequence
MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKAT
LWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTWGLTTETLKQTRVSETLAHPHLQNPTPNDPLGN