CuGenDBv2

Gene ID	Spg001958
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transportin-3 isoform X2
Genome location	scaffold10:311008..311436
RNA-Seq Expression	Spg001958
Synteny	Spg001958
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581155.1 Transportin-3, partial [Cucurbita argyrosperma subsp. sororia]

2.7e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

XP_022934438.1 transportin-3 isoform X2 [Cucurbita moschata]

2.7e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

XP_022983999.1 transportin-3 isoform X1 [Cucurbita maxima]

2.7e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

XP_023526726.1 transportin-3 isoform X1 [Cucurbita pepo subsp. pepo]

2.7e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

XP_038891351.1 transportin-3 [Benincasa hispida]

1.6e-32

95.95

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VQALPLEYLK GEVETLVPLWLKALGDAA DYLESKSCDE KTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D496 transportin-3 isoform X1

2.9e-32

93.24

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VQALPLEYLK GEVETLVPLWLKALGDAA DYL+SKSCDE+K NYGHMQGKGGRVLKRLVREFADGHRNIPNVT
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

A0A6J1F1T5 transportin-3 isoform X1

1.3e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

A0A6J1F7N6 transportin-3 isoform X2

1.3e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

A0A6J1J0X3 transportin-3 isoform X2

1.3e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

A0A6J1J969 transportin-3 isoform X1

1.3e-32

95.89

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VQALPLEYLK GEVETLVPLWLKALGDAACDYLESKSCDE+KTNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12930.1 ARM repeat superfamily protein

1.2e-19

63.51

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Query:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNY--GHMQGKGGRVLKRLVREFADGHRNIPN
        V ALP EYLK GE E++V  W +ALG A  DYLE+KSC+    N   GHMQGK GR LKRLVR+FAD HRN PN
Subjt:  VQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNY--GHMQGKGGRVLKRLVREFADGHRNIPN

Sequences

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CDS sequence

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ATGAGAGGAATAACTCGTGTACCATATAAATTGTGGGGGATTCATCTTTCCAACGTGGGATTCTCAACAGATGTGCAGGCTCTTCCACTTGAATACTTAAAAGCAGGGGA
AGTAGAAACTCTTGTACCACTATGGTTAAAGGCCCTTGGAGATGCAGCCTGTGACTACCTTGAAAGTAAAAGTTGTGATGAAGTGAAGACTAACTATGGACATATGCAAG
GGAAGGGTGGAAGAGTCCTGAAGCGTCTAGTTCGTGAATTTGCTGATGGTCACCGTAATATCCCAAATGTGACTTGA

mRNA sequence

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Protein sequence

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MRGITRVPYKLWGIHLSNVGFSTDVQALPLEYLKAGEVETLVPLWLKALGDAACDYLESKSCDEVKTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

Spg001958 (gene) of Sponge gourd (cylindrica) v1 genome