; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001983 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001983
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionnuclear pore complex protein GP210 isoform X1
Genome locationscaffold10:2368200..2372870
RNA-Seq ExpressionSpg001983
SyntenySpg001983
Gene Ontology termsGO:0005635 - nuclear envelope (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581051.1 Nuclear pore complex protein 210, partial [Cucurbita argyrosperma subsp. sororia]3.3e-7496.6Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MSNFA ALLVLLLMIGGS GAT HF SGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDIL+VLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

XP_022934340.1 nuclear pore complex protein GP210 isoform X1 [Cucurbita moschata]3.3e-7496.6Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MSNFA ALLVLLLMIGGS GAT HF SGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDIL+VLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

XP_022982533.1 nuclear pore complex protein GP210 isoform X1 [Cucurbita maxima]9.6e-7495.92Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MSNFA ALLVLLLMIGGS GAT HF SGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDIL+VLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFD E
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

XP_023522660.1 nuclear pore complex protein GP210-like, partial [Cucurbita pepo subsp. pepo]1.5e-7497.28Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MSNFA AL VLLLMIGGS GAT HFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

XP_023528997.1 LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. pepo]1.5e-7497.28Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MSNFA AL VLLLMIGGS GAT HFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

TrEMBL top hitse value%identityAlignment
A0A5A7UUS3 Nuclear pore complex protein GP210 isoform X31.2e-6991.16Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MS     LLVLLLMIGGS GAT HF+SGPHIADVNILLPP+MTNPVEYRLQGSDGCFKWSWDHHDIL+VLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADV TG VIRCKVFID FSRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

A0A6J1DE25 nuclear pore complex protein GP210 isoform X15.7e-7293.2Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        M NFA+ LLVLLLM+GGS G T HFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDIL VLPEYNVSSHCSTSALLRS+APYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDK SRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

A0A6J1DF60 nuclear pore complex protein GP210 isoform X25.7e-7293.2Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        M NFA+ LLVLLLM+GGS G T HFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDIL VLPEYNVSSHCSTSALLRS+APYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDK SRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

A0A6J1F7E5 nuclear pore complex protein GP210 isoform X11.6e-7496.6Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MSNFA ALLVLLLMIGGS GAT HF SGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDIL+VLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

A0A6J1J529 nuclear pore complex protein GP210 isoform X14.6e-7495.92Show/hide
Query:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
        MSNFA ALLVLLLMIGGS GAT HF SGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDIL+VLPEYNVSSHCSTSALLRSIAPYSGRKETAVY
Subjt:  MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVY

Query:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFD E
Subjt:  AADVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

SwissProt top hitse value%identityAlignment
F4KHD8 Nuclear pore complex protein GP2101.6e-6079.31Show/hide
Query:  NFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAA
        +F    L+LLL  G S    V   SGPHI DVNILLPPKM NPVEYRLQGSDGCFKWSWDHHDILSV PE+N SSHCSTSA LRSI+PYSGRKETAVYA 
Subjt:  NFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAA

Query:  DVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        D+QTG+VIRCKVFID FSRIQIFHNSIKLDLDGL+ LRVRAFD+E
Subjt:  DVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE

P11654 Nuclear pore membrane glycoprotein 2101.8e-1129.08Show/hide
Query:  LVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAADVQTGI
        L+LL  +G +  A ++           +LLP      V + L+ S+GC++WS    ++ S+ P  +    CS  A++++      R  + ++A D+ TG 
Subjt:  LVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAADVQTGI

Query:  VIRCKVFIDKFSRIQIFHNSIKLDL-DGLATLRVRAFDSEG
        V+RC   +D    IQI   + +L L D    L+++A DSEG
Subjt:  VIRCKVFIDKFSRIQIFHNSIKLDL-DGLATLRVRAFDSEG

Q8TEM1 Nuclear pore membrane glycoprotein 2104.1e-1130.08Show/hide
Query:  TVHFASGPHIADV-----NILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAADVQTGIVIRCKVFI
        +V  A+GP  A        +LLP      V + L+ S+GC++W     ++ S+ P       CS  A++++      R  + ++A D+ TG V+RC   +
Subjt:  TVHFASGPHIADV-----NILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAADVQTGIVIRCKVFI

Query:  DKFSRIQIFHNSIKLDL-DGLATLRVRAFDSEG
        D    IQI   + +L L D    L+++A DSEG
Subjt:  DKFSRIQIFHNSIKLDL-DGLATLRVRAFDSEG

Q9QY81 Nuclear pore membrane glycoprotein 2104.8e-1229.66Show/hide
Query:  ALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAADV
        AL  L+LL ++G +  A ++           +LLP      V + L+ S+GC++WS    ++ S+ P  +    CS  A++++      R  + ++A D+
Subjt:  ALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAADV

Query:  QTGIVIRCKVFIDKFSRIQIFHNSIKLDL-DGLATLRVRAFDSEG
         TG V+RC   +D    IQI   + +L L D    L+++A DSEG
Subjt:  QTGIVIRCKVFIDKFSRIQIFHNSIKLDL-DGLATLRVRAFDSEG

Arabidopsis top hitse value%identityAlignment
AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.8e-0429.41Show/hide
Query:  IGPFCCILCRMAEEDLDHILWSCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPPFQDQGKFLWQAGICAIIWGLWGERNN
        I  F C LC +  E  DH+L+SC+FA  VW   F     +        E++               L +    AII+ +W +RNN
Subjt:  IGPFCCILCRMAEEDLDHILWSCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPPFQDQGKFLWQAGICAIIWGLWGERNN

AT4G10613.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-0429.91Show/hide
Query:  VNTLDRLSRKIPCF-----IGPFCCILCRMAEEDLDHILWSCDFATAVWDEF---FGLFGLQFARHRGLREMIEEFLPHPPFQDQGKFLWQAGICAIIWG
        ++ LDRL  +         I P CC LC  + E  DH++ +C F++++W+       L  +QF     L   I+      P   + K + QA +CAI   
Subjt:  VNTLDRLSRKIPCF-----IGPFCCILCRMAEEDLDHILWSCDFATAVWDEF---FGLFGLQFARHRGLREMIEEFLPHPPFQDQGKFLWQAGICAIIWG

Query:  LWGERNN
         W +RNN
Subjt:  LWGERNN

AT5G40480.1 embryo defective 30121.2e-6179.31Show/hide
Query:  NFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAA
        +F    L+LLL  G S    V   SGPHI DVNILLPPKM NPVEYRLQGSDGCFKWSWDHHDILSV PE+N SSHCSTSA LRSI+PYSGRKETAVYA 
Subjt:  NFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAA

Query:  DVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE
        D+QTG+VIRCKVFID FSRIQIFHNSIKLDLDGL+ LRVRAFD+E
Subjt:  DVQTGIVIRCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATTTCGCTCTTGCGCTGCTTGTTCTTCTCTTGATGATCGGTGGAAGCTGCGGAGCGACGGTTCATTTTGCCTCTGGTCCGCACATTGCCGACGTGAATATATT
GTTGCCTCCCAAGATGACTAATCCAGTGGAGTATAGGCTGCAAGGGAGTGATGGTTGCTTCAAATGGTCTTGGGATCATCATGACATTCTTTCTGTTCTACCGGAATACA
ATGTAAGTAGTCACTGCTCGACAAGTGCTCTGTTGAGATCTATTGCTCCTTACAGTGGTCGTAAGGAGACTGCTGTTTATGCGGCTGATGTACAAACTGGAATTGTAATT
CGCTGCAAAGTTTTTATCGACAAATTTTCCAGAATCCAGATATTTCACAATTCTATCAAACTCGACTTGGATGGGCTTGCTACACTCCGAGTCCGTGCCTTTGACAGTGA
AGGACCCTTGCAGAGAAATTGTATCTTCAAGGCGTGGACCAAATCAATTGATCCCTTGATGAATCTTCGACTTCTTCCACTTTGCACTCTCGAGTCTCTCCTTCAGCGCT
TGGTTATCCATGGAAGAGTCAACACCCTTGATCGGCTCTCCAGAAAGATTCCTTGTTTCATTGGGCCCTTTTGCTGCATTCTTTGTCGGATGGCGGAGGAAGACCTTGAC
CATATTTTGTGGAGCTGCGATTTTGCTACGGCTGTTTGGGATGAGTTCTTTGGTCTATTCGGCTTGCAGTTTGCCAGACATAGAGGTCTTAGAGAGATGATTGAGGAGTT
CCTTCCCCATCCCCCTTTTCAGGATCAGGGAAAGTTCTTGTGGCAAGCTGGGATTTGTGCTATTATTTGGGGGCTTTGGGGTGAGAGAAACAATAGGGCTTTTAGAGGGT
TGGAGAGGGACACAGTTAAGGTCCTTCCAGCTGGAGAAGGGATTTCCCTTCAGCCCATCGATACCACCACAGAGCTACTCCTGCGAAACTTATCGCCGTTACTGTGGTTT
TTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATTTCGCTCTTGCGCTGCTTGTTCTTCTCTTGATGATCGGTGGAAGCTGCGGAGCGACGGTTCATTTTGCCTCTGGTCCGCACATTGCCGACGTGAATATATT
GTTGCCTCCCAAGATGACTAATCCAGTGGAGTATAGGCTGCAAGGGAGTGATGGTTGCTTCAAATGGTCTTGGGATCATCATGACATTCTTTCTGTTCTACCGGAATACA
ATGTAAGTAGTCACTGCTCGACAAGTGCTCTGTTGAGATCTATTGCTCCTTACAGTGGTCGTAAGGAGACTGCTGTTTATGCGGCTGATGTACAAACTGGAATTGTAATT
CGCTGCAAAGTTTTTATCGACAAATTTTCCAGAATCCAGATATTTCACAATTCTATCAAACTCGACTTGGATGGGCTTGCTACACTCCGAGTCCGTGCCTTTGACAGTGA
AGGACCCTTGCAGAGAAATTGTATCTTCAAGGCGTGGACCAAATCAATTGATCCCTTGATGAATCTTCGACTTCTTCCACTTTGCACTCTCGAGTCTCTCCTTCAGCGCT
TGGTTATCCATGGAAGAGTCAACACCCTTGATCGGCTCTCCAGAAAGATTCCTTGTTTCATTGGGCCCTTTTGCTGCATTCTTTGTCGGATGGCGGAGGAAGACCTTGAC
CATATTTTGTGGAGCTGCGATTTTGCTACGGCTGTTTGGGATGAGTTCTTTGGTCTATTCGGCTTGCAGTTTGCCAGACATAGAGGTCTTAGAGAGATGATTGAGGAGTT
CCTTCCCCATCCCCCTTTTCAGGATCAGGGAAAGTTCTTGTGGCAAGCTGGGATTTGTGCTATTATTTGGGGGCTTTGGGGTGAGAGAAACAATAGGGCTTTTAGAGGGT
TGGAGAGGGACACAGTTAAGGTCCTTCCAGCTGGAGAAGGGATTTCCCTTCAGCCCATCGATACCACCACAGAGCTACTCCTGCGAAACTTATCGCCGTTACTGTGGTTT
TTTTAG
Protein sequenceShow/hide protein sequence
MSNFALALLVLLLMIGGSCGATVHFASGPHIADVNILLPPKMTNPVEYRLQGSDGCFKWSWDHHDILSVLPEYNVSSHCSTSALLRSIAPYSGRKETAVYAADVQTGIVI
RCKVFIDKFSRIQIFHNSIKLDLDGLATLRVRAFDSEGPLQRNCIFKAWTKSIDPLMNLRLLPLCTLESLLQRLVIHGRVNTLDRLSRKIPCFIGPFCCILCRMAEEDLD
HILWSCDFATAVWDEFFGLFGLQFARHRGLREMIEEFLPHPPFQDQGKFLWQAGICAIIWGLWGERNNRAFRGLERDTVKVLPAGEGISLQPIDTTTELLLRNLSPLLWF
F