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Spg001996 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001996
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionphosphoglucan phosphatase LSF1, chloroplastic isoform X1
Genome locationscaffold10:3247906..3248250
RNA-Seq ExpressionSpg001996
SyntenySpg001996
Gene Ontology termsGO:0005983 - starch catabolic process (biological process)
GO:0006470 - protein dephosphorylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0043036 - starch grain (cellular component)
GO:0008138 - protein tyrosine/serine/threonine phosphatase activity (molecular function)
InterPro domainsIPR030066 - Putative phosphatase LSF1, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053669.1 phosphoglucan phosphatase LSF1 [Cucumis melo var. makuwa]2.3e-3578.5Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +  ID SSSPLLR  KSSLFWGRDLCFGNG IR  P  +A FN   RV K+FAMSD  +SSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

XP_004141092.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Cucumis sativus]1.0e-3578.5Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +R ID SSSPLLRG KSS FWGRDLCFGNG +R  P  +A FN   R+ KVFAMSD  +SSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

XP_008443521.1 PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Cucumis melo]2.3e-3578.5Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +  ID SSSPLLR  KSSLFWGRDLCFGNG IR  P  +A FN   RV K+FAMSD  +SSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

XP_038903050.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Benincasa hispida]5.5e-3782.24Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +R ID SSSPLLRG KSSLFWGRDLCFGNG IR    +KA FN   RV KVFAMSD  SSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

XP_038903051.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X2 [Benincasa hispida]5.5e-3782.24Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +R ID SSSPLLRG KSSLFWGRDLCFGNG IR    +KA FN   RV KVFAMSD  SSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

TrEMBL top hitse value%identityAlignment
A0A0A0LCC8 Uncharacterized protein5.0e-3678.5Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +R ID SSSPLLRG KSS FWGRDLCFGNG +R  P  +A FN   R+ KVFAMSD  +SSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

A0A1S3B8A8 phosphoglucan phosphatase LSF1, chloroplastic isoform X11.1e-3578.5Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +  ID SSSPLLR  KSSLFWGRDLCFGNG IR  P  +A FN   RV K+FAMSD  +SSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

A0A5D3BP45 Phosphoglucan phosphatase LSF11.1e-3578.5Show/hide
Query:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
        MAVLQ P +  ID SSSPLLR  KSSLFWGRDLCFGNG IR  P  +A FN   RV K+FAMSD  +SSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF
Subjt:  MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIF

Query:  VHSLKKG
        VHSLKKG
Subjt:  VHSLKKG

A0A6J1EJ02 phosphoglucan phosphatase LSF1, chloroplastic isoform X15.7e-3275.96Show/hide
Query:  LQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHS
        LQ   +R IDSSSSPLLRG KSSLFWGR L FG G IR  P +KARFN R   F+VFAMSD   SSSS+KMNLNEY+VTL+KPLGIRFAISVDGRIFVHS
Subjt:  LQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHS

Query:  LKKG
        LKKG
Subjt:  LKKG

A0A6J1JNK1 phosphoglucan phosphatase LSF1, chloroplastic isoform X15.7e-3274.55Show/hide
Query:  MAVL---QFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG
        MAVL   Q P +R IDSSSSPLLRG KSSLFWGR L FG G IR  P +KA FN R   F+VFAMSD   SSSS+KMNLNEY+VTL+KPLGIRFAISVDG
Subjt:  MAVL---QFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDG

Query:  RIFVHSLKKG
        RIFVHSLKKG
Subjt:  RIFVHSLKKG

SwissProt top hitse value%identityAlignment
F4J117 Phosphoglucan phosphatase LSF1, chloroplastic1.2e-1551.43Show/hide
Query:  QFPYIRAIDSSSSPLLRGCKSSLFWGRDLCF-GNGDIRVAPTLKARFNARPR-VFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVH
        Q   + A++ S   ++ G  SS   G    F G G   +    K  FN R R V +V AM   SSSS+ FKMNLNEYMVTLEKPLGIRFA+S DG+IFVH
Subjt:  QFPYIRAIDSSSSPLLRGCKSSLFWGRDLCF-GNGDIRVAPTLKARFNARPR-VFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVH

Query:  SLKKG
        ++KKG
Subjt:  SLKKG

Arabidopsis top hitse value%identityAlignment
AT3G01510.1 like SEX4 18.8e-1751.43Show/hide
Query:  QFPYIRAIDSSSSPLLRGCKSSLFWGRDLCF-GNGDIRVAPTLKARFNARPR-VFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVH
        Q   + A++ S   ++ G  SS   G    F G G   +    K  FN R R V +V AM   SSSS+ FKMNLNEYMVTLEKPLGIRFA+S DG+IFVH
Subjt:  QFPYIRAIDSSSSPLLRGCKSSLFWGRDLCF-GNGDIRVAPTLKARFNARPR-VFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVH

Query:  SLKKG
        ++KKG
Subjt:  SLKKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTCTGCAGTTTCCATATATCAGGGCTATTGATTCTTCCTCTTCGCCATTGTTGAGAGGATGTAAATCGTCGTTGTTCTGGGGAAGAGATTTGTGTTTCGGAAA
TGGAGATATTAGAGTTGCTCCGACACTGAAAGCTCGATTCAATGCTCGACCTCGAGTTTTTAAGGTTTTCGCCATGTCGGATGCCTCCTCTTCTTCTTCTTCCTTTAAGA
TGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGTAGAATCTTCGTTCACTCGCTTAAGAAAGGGGTATTTTCA
TCTCTTTCTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTCTGCAGTTTCCATATATCAGGGCTATTGATTCTTCCTCTTCGCCATTGTTGAGAGGATGTAAATCGTCGTTGTTCTGGGGAAGAGATTTGTGTTTCGGAAA
TGGAGATATTAGAGTTGCTCCGACACTGAAAGCTCGATTCAATGCTCGACCTCGAGTTTTTAAGGTTTTCGCCATGTCGGATGCCTCCTCTTCTTCTTCTTCCTTTAAGA
TGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGTAGAATCTTCGTTCACTCGCTTAAGAAAGGGGTATTTTCA
TCTCTTTCTTTTTAA
Protein sequenceShow/hide protein sequence
MAVLQFPYIRAIDSSSSPLLRGCKSSLFWGRDLCFGNGDIRVAPTLKARFNARPRVFKVFAMSDASSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGVFS
SLSF