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Spg002067 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002067
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:25755374..25758412
RNA-Seq ExpressionSpg002067
SyntenySpg002067
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-0853.25Show/hide
Query:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR
        T VEIELP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GGGV  P + R
Subjt:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.3e-0861.9Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTIPLS
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GGGVT  ++
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTIPLS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-0959.15Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV  P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-0853.25Show/hide
Query:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR
        T VEIELP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GGGV  P + R
Subjt:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-0959.15Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV  P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.8e-0853.25Show/hide
Query:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR
        T VEIELP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GGGV  P + R
Subjt:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR

A0A5A7VMG9 Reverse transcriptase3.6e-0959.15Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV  P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP

A0A5D3BAD1 Retrotrans_gag domain-containing protein6.2e-0961.9Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTIPLS
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GGGVT  ++
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTIPLS

A0A5D3D150 Reverse transcriptase1.8e-0853.25Show/hide
Query:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR
        T VEIELP+PDTLPTSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GGGV  P + R
Subjt:  TPVEIELPVPDTLPTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIR

A0A5D3DX39 Reverse transcriptase3.6e-0959.15Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GGGV  P
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGGGVTIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTCAAAAACAGCAGCAAGAGGTCCTTGATCTCGCTGGAAAATAGCCACGAACACCACCACTTGATGACACCGGTTGAGATCGAGCTCCCGGTGCCTGATACACT
GCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGA
CTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAATTCCCTTGTCCATTAGAGTCTCATCGTTTGCATTCATGGGAACCCCAGCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTCAAAAACAGCAGCAAGAGGTCCTTGATCTCGCTGGAAAATAGCCACGAACACCACCACTTGATGACACCGGTTGAGATCGAGCTCCCGGTGCCTGATACACT
GCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGA
CTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAATTCCCTTGTCCATTAGAGTCTCATCGTTTGCATTCATGGGAACCCCAGCTCTTTGA
Protein sequenceShow/hide protein sequence
MALKNSSKRSLISLENSHEHHHLMTPVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTIPLSIRVSSFAFMGTPAL