; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg002068 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002068
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S8, chloroplastic
Genome locationscaffold2:26433608..26437423
RNA-Seq ExpressionSpg002068
SyntenySpg002068
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000630 - Ribosomal protein S8
IPR035987 - Ribosomal protein S8 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG2231943.1 unnamed protein product [Mytilus edulis]2.7e-0839.66Show/hide
Query:  SALACSGMGSKYESL--DSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTK--LEGSHVG
        S +A S +G +Y+S+   SHVG+  K      HVGV  K   +  HVGV  K  I  SHVG   K      HVGV  K     SHVGV  K  +  SHVG
Subjt:  SALACSGMGSKYESL--DSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTK--LEGSHVG

Query:  VDTKLESLGLLVRVGTKLKNL--SSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHVFDLTCNNRIGLGH
        VD K  S+  +  VG   K++   SHVGV +K     SHVG+  K     SHV V  K     SHV  +   N I + H
Subjt:  VDTKLESLGLLVRVGTKLKNL--SSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHVFDLTCNNRIGLGH

EJO68243.1 hypothetical protein LEP1GSC044_0115 [Leptospira kirschneri serovar Grippotyphosa str. RM52]1.4e-0941.33Show/hide
Query:  GMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESL
        G  +K ES   +VG  TK+ES   +VG   KLE    +VG  TKLE    +VG  TKL+S   +VG  TKL+S   +VG  TKLE    +VG  TKLES 
Subjt:  GMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESL

Query:  GLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLE
           V   TKL++ S +VG   K++S   +VG  +K +    +V   TK+E
Subjt:  GLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLE

EPG49091.1 hypothetical protein LEP1GSC049_1607 [Leptospira kirschneri serovar Cynopteri str. 3522 CT]1.4e-0941.33Show/hide
Query:  GMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESL
        G  +K ES   +VG  TK+ES   +VG   KLE    +VG  TK+E    +VG  TKL+S   +VG  TKL+S   +VG  TKLE    +VG  TKLES 
Subjt:  GMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESL

Query:  GLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLE
           V   TKL++ S +VG   KL+S   +VG  +K +    +V   TK+E
Subjt:  GLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLE

TQE08519.1 hypothetical protein C1H46_005825 [Malus baccata]1.1e-2073.17Show/hide
Query:  ALPKEASGNDLSWAYAMK---LG-KIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWET
        ALPKEASGN LSWAYAMK   LG K  CAYVDGSLQFPK REG FPT DEKCLASN MTCVLPLSPIYT          W T
Subjt:  ALPKEASGNDLSWAYAMK---LG-KIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWET

WP_131767158.1 hypothetical protein [Candidatus Frankia datiscae]6.4e-3480Show/hide
Query:  ALPKEASGNDLSWAYAMK---LGKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFY
        ALPKE SGNDLSW YAMK   LGK F AYVDGSLQFPK REG FPT DEKCLASN +TCVLPLSPIYTVTSFAT KD+++ ISHLDSQ+D PPFY
Subjt:  ALPKEASGNDLSWAYAMK---LGKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFY

TrEMBL top hitse value%identityAlignment
A0A250WPR9 Uncharacterized protein1.3e-0833.12Show/hide
Query:  GSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESLGL
        G++ E    HV  GT+ E   LHV  G + E    HV  GT+ E+   HV +GT+ +   LHV  GT+ ++   HV  GT+ E    HV   T+ E   L
Subjt:  GSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTKLE--GSHVGVDTKLESLGL

Query:  LVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHV
         V  GT+ +  + +V    + +    HV  G++ +    HVD GT+ E    HV
Subjt:  LVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHV

A0A2N9G8J8 Uncharacterized protein2.2e-3278.95Show/hide
Query:  ALPKEASGNDLSWAYAMK---LGKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFY
        ALPKEASGNDLSWAYAMK   LGK  CAYV GSLQF K REG FPT DEKCLA N M CVLPLSPIYTVTSFAT K+IW+ IS+L SQDD PPFY
Subjt:  ALPKEASGNDLSWAYAMK---LGKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFY

A0A540NBV2 Uncharacterized protein5.2e-2173.17Show/hide
Query:  ALPKEASGNDLSWAYAMK---LG-KIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWET
        ALPKEASGN LSWAYAMK   LG K  CAYVDGSLQFPK REG FPT DEKCLASN MTCVLPLSPIYT          W T
Subjt:  ALPKEASGNDLSWAYAMK---LG-KIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWET

A7RZA4 Predicted protein (Fragment)1.3e-0831.85Show/hide
Query:  SGMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTK---LEGSHVGVDTKLE
        S +GSK  +LD H  +G+K  +L  H  +G+K      H   G+K   L  H   G+K  +L  H  +G+K  +L  H  +G+K   L+G H    +K  
Subjt:  SGMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGTK---LEGSHVGVDTKLE

Query:  SLGLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSH
        +L     +G+K   L  H  +  K  +LD H  +GSK   L  H  +G+K   L  H
Subjt:  SLGLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSH

C3YP24 Uncharacterized protein6.5e-0839.74Show/hide
Query:  SHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGT--KLEGSHVGVDTKLESLGLLVRVGTKL
        SHVG+ T M     HVGV   +     HVGV T + I  SHVG  T +     HVGV T +    SHVGV T   +  SHVGV T +      V V T +
Subjt:  SHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEGTKLKSLGLHVGVGTKLKSLGSHVGVGT--KLEGSHVGVDTKLESLGLLVRVGTKL

Query:  KNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHVFDLTC
            SHVGV   +    SHVG+ +      SHV V T +    SHV   TC
Subjt:  KNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHVFDLTC

SwissProt top hitse value%identityAlignment
A6MM72 30S ribosomal protein S8, chloroplastic8.2e-0887.5Show/hide
Query:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW
        M IVILSTSRGIMT+REARL+GI GEILCYIW
Subjt:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW

A6MMF8 30S ribosomal protein S8, chloroplastic8.2e-0887.5Show/hide
Query:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW
        M IVILSTSRGIMT+REARL+GI GEILCYIW
Subjt:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW

Q49KW3 30S ribosomal protein S8, chloroplastic8.2e-0887.5Show/hide
Query:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW
        M IVILSTSRGIMT+REARL+GI GEILCYIW
Subjt:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW

Q4VZK0 30S ribosomal protein S8, chloroplastic3.7e-0890.62Show/hide
Query:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW
        M IVILSTSRGIMT+REARLQGI GEILCYIW
Subjt:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW

Q8S8V8 30S ribosomal protein S8, chloroplastic8.2e-0887.5Show/hide
Query:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW
        M IVILSTSRGIMT+REARL+GI GEILCYIW
Subjt:  MRIVILSTSRGIMTNREARLQGIDGEILCYIW

Arabidopsis top hitse value%identityAlignment
ATCG00770.1 ribosomal protein S83.2e-0783.33Show/hide
Query:  IVILSTSRGIMTNREARLQGIDGEILCYIW
        IVILSTS+GIMT+REARL+ I GEILCYIW
Subjt:  IVILSTSRGIMTNREARLQGIDGEILCYIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAAACCGAGAAGCTCGATTACAGGGAATCGACGGAGAAATTTTATGTTATATATGGTTATCCCATATCAG
TCGGCCAATCAACAAAGATTTGAAGAATGACCGACCCGTTTTTGAGCCTACGAAAGGAAATTCCATTAGAACATATAACAAAGGCGTGAATGGGAGAATACGGTACCATA
AGGAGGAATTCCTCGTTCTTCATGACTACCCGAAGGAGGAGAGAAGAAAAACGGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGCTC
GGGAAAATATTTTGTGCTTATGTGGATGGGTCACTTCAATTTCCCAAGATTCGAGAAGGATATTTTCCTACAACAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTG
TGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCACTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTATCCACCTTTCTATT
GTGGATGGATTGAGCCAATGTTTTCCGCAATTCCAATACGAGAAGCGGATTCCACTTTTATTTATTATAGATTTTGCACCTTCAAAAGTTCCAGGCATATTGAATTACAG
AAAGAGATGAATGTGTACTTTTTGTTGCTACAGGGCAAGAAAGAGAGGTGGGGAAGATCAATTTGTGGTGTCCCAATTGTTGACGCATGGGAATTCCAATCCTTCAATCT
TGACCCGGATGGCAGTGTCTCGACCCTGATTTGTCCTTCAGCGCTCGCATGTAGTGGCATGGGCTCTAAATATGAAAGTTTAGACTCGCATGTAGGCATGGGAACTAAGA
TGGAAAGCTTAGGCTTGCACGTAGGCGTGGGCGCCAAGCTCGAGGGCTCGGGCTGGCATGTAGGCGTGGGCACTAAGCTTGAAATCTTAGGCTCGCATGTAGGCGAGGGC
ACTAAGCTGAAAAGCTTAGGCTTGCATGTAGGTGTGGGCACCAAGCTGAAAAGCTTAGGCTCGCATGTAGGCGTGGGCACCAAGCTCGAGGGCTCGCATGTAGGCGTGGA
CACTAAACTAGAAAGCTTAGGCTTGCTTGTACGCGTGGGCACTAAGTTGAAAAACTTAAGCTCGCATGTAGGTGTGAGCTTTAAGCTAAAAAGCTTAGACTCACATGTAG
GCATGGGCTCTAAGCGGAAAGGCCTAGGCTCGCATGTTGATGTGGGCACTAAGCTGGAAGGCTTAGGCTCACATGTATTCGATCTCACTTGTAACAATAGGATAGGCCTT
GGTCACAACCATGGCTGGGGTCGATCTCGGCCTTGGGCATGGATATGGTCGGCCTTGGCCTCAACCATATCTGGAGTCAGCCTCGAACAATCTATCGTCTTTTGTATCTT
GCTTCTTTGCTTCAATCTTGATCTCGTCTTGTGTCAACAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAAACCGAGAAGCTCGATTACAGGGAATCGACGGAGAAATTTTATGTTATATATGGTTATCCCATATCAG
TCGGCCAATCAACAAAGATTTGAAGAATGACCGACCCGTTTTTGAGCCTACGAAAGGAAATTCCATTAGAACATATAACAAAGGCGTGAATGGGAGAATACGGTACCATA
AGGAGGAATTCCTCGTTCTTCATGACTACCCGAAGGAGGAGAGAAGAAAAACGGCTCTTCCGAAAGAAGCATCTGGAAATGACTTGTCATGGGCTTATGCGATGAAGCTC
GGGAAAATATTTTGTGCTTATGTGGATGGGTCACTTCAATTTCCCAAGATTCGAGAAGGATATTTTCCTACAACAGATGAAAAGTGCTTAGCTTCAAATGAGATGACTTG
TGTACTTCCTTTGAGCCCCATATACACCGTCACCTCTTTTGCGACCACTAAAGATATTTGGGAAACCATAAGTCATCTTGATTCTCAGGATGATTATCCACCTTTCTATT
GTGGATGGATTGAGCCAATGTTTTCCGCAATTCCAATACGAGAAGCGGATTCCACTTTTATTTATTATAGATTTTGCACCTTCAAAAGTTCCAGGCATATTGAATTACAG
AAAGAGATGAATGTGTACTTTTTGTTGCTACAGGGCAAGAAAGAGAGGTGGGGAAGATCAATTTGTGGTGTCCCAATTGTTGACGCATGGGAATTCCAATCCTTCAATCT
TGACCCGGATGGCAGTGTCTCGACCCTGATTTGTCCTTCAGCGCTCGCATGTAGTGGCATGGGCTCTAAATATGAAAGTTTAGACTCGCATGTAGGCATGGGAACTAAGA
TGGAAAGCTTAGGCTTGCACGTAGGCGTGGGCGCCAAGCTCGAGGGCTCGGGCTGGCATGTAGGCGTGGGCACTAAGCTTGAAATCTTAGGCTCGCATGTAGGCGAGGGC
ACTAAGCTGAAAAGCTTAGGCTTGCATGTAGGTGTGGGCACCAAGCTGAAAAGCTTAGGCTCGCATGTAGGCGTGGGCACCAAGCTCGAGGGCTCGCATGTAGGCGTGGA
CACTAAACTAGAAAGCTTAGGCTTGCTTGTACGCGTGGGCACTAAGTTGAAAAACTTAAGCTCGCATGTAGGTGTGAGCTTTAAGCTAAAAAGCTTAGACTCACATGTAG
GCATGGGCTCTAAGCGGAAAGGCCTAGGCTCGCATGTTGATGTGGGCACTAAGCTGGAAGGCTTAGGCTCACATGTATTCGATCTCACTTGTAACAATAGGATAGGCCTT
GGTCACAACCATGGCTGGGGTCGATCTCGGCCTTGGGCATGGATATGGTCGGCCTTGGCCTCAACCATATCTGGAGTCAGCCTCGAACAATCTATCGTCTTTTGTATCTT
GCTTCTTTGCTTCAATCTTGATCTCGTCTTGTGTCAACAACATTGA
Protein sequenceShow/hide protein sequence
MRIVILSTSRGIMTNREARLQGIDGEILCYIWLSHISRPINKDLKNDRPVFEPTKGNSIRTYNKGVNGRIRYHKEEFLVLHDYPKEERRKTALPKEASGNDLSWAYAMKL
GKIFCAYVDGSLQFPKIREGYFPTTDEKCLASNEMTCVLPLSPIYTVTSFATTKDIWETISHLDSQDDYPPFYCGWIEPMFSAIPIREADSTFIYYRFCTFKSSRHIELQ
KEMNVYFLLLQGKKERWGRSICGVPIVDAWEFQSFNLDPDGSVSTLICPSALACSGMGSKYESLDSHVGMGTKMESLGLHVGVGAKLEGSGWHVGVGTKLEILGSHVGEG
TKLKSLGLHVGVGTKLKSLGSHVGVGTKLEGSHVGVDTKLESLGLLVRVGTKLKNLSSHVGVSFKLKSLDSHVGMGSKRKGLGSHVDVGTKLEGLGSHVFDLTCNNRIGL
GHNHGWGRSRPWAWIWSALASTISGVSLEQSIVFCILLLCFNLDLVLCQQH