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Spg002077 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002077
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:25966479..25973559
RNA-Seq ExpressionSpg002077
SyntenySpg002077
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057197.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-1370.59Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
        PLSTLSVLRDNDA+VEIEL VPDTLPTSAESS S+S+TWLELY ES            VMSGLH +YV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-1393.62Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ESV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
TYK18765.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-1370.59Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
        PLSTLSVLRDNDA+VEIEL VPDTLPTSAESS S+S+TWLELY ES            VMSGLH +YV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.1e-1393.62Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ESV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-1391.49Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY+E V
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
TrEMBL top hitse value%identityAlignment
A0A5A7URC7 Gag/pol protein1.8e-1370.59Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
        PLSTLSVLRDNDA+VEIEL VPDTLPTSAESS S+S+TWLELY ES            VMSGLH +YV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
A0A5A7V9N3 Reverse transcriptase1.0e-1393.62Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ESV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
A0A5D3D5E2 Gag/pol protein1.8e-1370.59Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
        PLSTLSVLRDNDA+VEIEL VPDTLPTSAESS S+S+TWLELY ES            VMSGLH +YV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIES------------VMSGLHHVYV
A0A5D3DSY7 Putative Retrotransposon protein1.0e-1393.62Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY ESV
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
A0A5D3DX39 Reverse transcriptase2.3e-1391.49Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY+E V
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCCATGGTTTGCCACTGCATGAAAGGTTTACCTAGGGAAGAAAACAGAGGAAAAGCTGGAATTTCTCAGAAATGCGACCGCATTTCTGGAAAAACTGAAGTCGT
TCCGAGTCATCCGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGCTACTTTGCATGTTATGTGAGTTTGATCTCGAAAGGGACAGACGATATCGGTTCTCATA
AAGGTGATATAGGAGAAAAAGCTCGAAAGAGATTGTTAGGCGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGGTTTGAGGTTGAAGGAGAT
AAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTTATATTCCGTTGTCCACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGA
GCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTATGTCAGGGCTGCACCATGTGT
ATGTTGAAAGGGCTCTACCCTCTCACTGGCTCGAGAGGGGTTTCTGTTTGGTGGTTGAACCACAAACAGGTTGTTCATTAGAGGAGCACCGGTCCATTAGGTCCCAC
mRNA sequenceShow/hide mRNA sequence
ATGACACCCATGGTTTGCCACTGCATGAAAGGTTTACCTAGGGAAGAAAACAGAGGAAAAGCTGGAATTTCTCAGAAATGCGACCGCATTTCTGGAAAAACTGAAGTCGT
TCCGAGTCATCCGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGCTACTTTGCATGTTATGTGAGTTTGATCTCGAAAGGGACAGACGATATCGGTTCTCATA
AAGGTGATATAGGAGAAAAAGCTCGAAAGAGATTGTTAGGCGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGGTTTGAGGTTGAAGGAGAT
AAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTTATATTCCGTTGTCCACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGA
GCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTATGTCAGGGCTGCACCATGTGT
ATGTTGAAAGGGCTCTACCCTCTCACTGGCTCGAGAGGGGTTTCTGTTTGGTGGTTGAACCACAAACAGGTTGTTCATTAGAGGAGCACCGGTCCATTAGGTCCCAC
Protein sequenceShow/hide protein sequence
MTPMVCHCMKGLPREENRGKAGISQKCDRISGKTEVVPSHPRVVVDESSSHLTGYFACYVSLISKGTDDIGSHKGDIGEKARKRLLGEHLRERVKEEEEEEFRGFEVEGD
KKSSCKASHSRIWVQNCYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVMSGLHHVYVERALPSHWLERGFCLVVEPQTGCSLEEHRSIRSH