; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg002085 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002085
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:27092679..27095918
RNA-Seq ExpressionSpg002085
SyntenySpg002085
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025969.1 hypothetical protein E6C27_scaffold34G002840 [Cucumis melo var. makuwa]1.8e-2850.63Show/hide
Query:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT
        + K F +PQ+L+ L + FS++F   H KE     T +   +          +EVDNS   +QRTSVFDRIKP TT  SVFQR+ M   +EENQCPTST+T
Subjt:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT

Query:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI
        + SAF+RLS+STSKK RPST  FDRLK+TNDQ +R++  L+ K F+E N  +K+HS +
Subjt:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-2844.29Show/hide
Query:  EEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKKF-------------SQPQQLVMLNKSFSKTF---HKKEKENFATSYCI
        E I  E +E I    K  +ER +     KS   +KH  G+   ++K  R+KK               QP+Q + L + F ++F   H +E     T +  
Subjt:  EEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKKF-------------SQPQQLVMLNKSFSKTF---HKKEKENFATSYCI

Query:  DV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDN
         +          EEVDNS   +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +
Subjt:  DV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDN

Query:  LELKLFNEVNSSEKLHSSI
        L+ K F+E N  +K+HS +
Subjt:  LELKLFNEVNSSEKLHSSI

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-2743.93Show/hide
Query:  EMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKK-------------FSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV
        E +E I+ + K  +ER +      S   +KH  G+   ++K  R+KK             F QP+Q + L +   ++F +   E         T+  ++V
Subjt:  EMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKK-------------FSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV

Query:  -------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKL
               EE+DNS   +QRTSVFDRIKP TT  SVFQR+SM   KEENQCPTST+ R SAF+RLS+STSKK RPSTS FDRLK+TNDQ +R+M  L+ K 
Subjt:  -------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKL

Query:  FNEVNSSEKLHSSI
        F+E N  +K+HS +
Subjt:  FNEVNSSEKLHSSI

KAA0066532.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.7e-2842.79Show/hide
Query:  VMMTETRTMEE-IMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKK-------------FSQPQQLVMLNKSFSKTFHKKEKEN
        +M + ++  EE I  E +E I    K  +ER +    +KS   +KH  G+   ++K  R+KK             F QP+Q + L +   ++F +   E 
Subjt:  VMMTETRTMEE-IMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKK-------------FSQPQQLVMLNKSFSKTFHKKEKEN

Query:  FA------TSYCIDV-------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVT
                T+  I+V       EEVDNS   +QRTS+FD IKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS+STSKK RPSTS FDRLK+T
Subjt:  FA------TSYCIDV-------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVT

Query:  NDQPKRKMDNLELKLFNEVNSSEKLHSSI
        NDQ +R+M +L+ K F+E N  +K+HS +
Subjt:  NDQPKRKMDNLELKLFNEVNSSEKLHSSI

TYK04207.1 hypothetical protein E5676_scaffold24967G00060 [Cucumis melo var. makuwa]1.1e-2750Show/hide
Query:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT
        + K   +P++L+ L + FS++F   H KE     T +   +          +EVDNS   +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+T
Subjt:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT

Query:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI
        + SAF+RLS+STSKK RPST  FDRLK+ NDQ +R+M  L+ K F+E N  +K+HS +
Subjt:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI

TrEMBL top hitse value%identityAlignment
A0A5A7SL36 Uncharacterized protein8.5e-2950.63Show/hide
Query:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT
        + K F +PQ+L+ L + FS++F   H KE     T +   +          +EVDNS   +QRTSVFDRIKP TT  SVFQR+ M   +EENQCPTST+T
Subjt:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT

Query:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI
        + SAF+RLS+STSKK RPST  FDRLK+TNDQ +R++  L+ K F+E N  +K+HS +
Subjt:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI

A0A5A7TQ06 Retrotransposon gag protein3.2e-2844.29Show/hide
Query:  EEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKKF-------------SQPQQLVMLNKSFSKTF---HKKEKENFATSYCI
        E I  E +E I    K  +ER +     KS   +KH  G+   ++K  R+KK               QP+Q + L + F ++F   H +E     T +  
Subjt:  EEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKKF-------------SQPQQLVMLNKSFSKTF---HKKEKENFATSYCI

Query:  DV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDN
         +          EEVDNS   +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +
Subjt:  DV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDN

Query:  LELKLFNEVNSSEKLHSSI
        L+ K F+E N  +K+HS +
Subjt:  LELKLFNEVNSSEKLHSSI

A0A5A7U9R6 Gag protease polyprotein7.2e-2850.63Show/hide
Query:  RSKKFSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT
        + + F QP+QL+ L +  S++F +   E         T+  +++       EEVDNS   +QRTSVFDRIK  TT  SVFQR+SM   +EENQ PTST+T
Subjt:  RSKKFSQPQQLVMLNKSFSKTFHKKEKENFA------TSYCIDV-------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT

Query:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI
        R SAF+RLS+STSKK RPSTS FDRLK+TNDQ +R+M +L+ K F+E N  +K+HS +
Subjt:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI

A0A5D3BXG7 Uncharacterized protein5.5e-2850Show/hide
Query:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT
        + K   +P++L+ L + FS++F   H KE     T +   +          +EVDNS   +QRTSVFDRIKP TT  SVFQR+SM   +EENQCPTST+T
Subjt:  RSKKFSQPQQLVMLNKSFSKTF---HKKEKENFATSYCIDV----------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFT

Query:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI
        + SAF+RLS+STSKK RPST  FDRLK+ NDQ +R+M  L+ K F+E N  +K+HS +
Subjt:  RPSAFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSI

A0A5D3DQU7 Retrotransposon gag protein4.2e-2842.79Show/hide
Query:  VMMTETRTMEE-IMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKK-------------FSQPQQLVMLNKSFSKTFHKKEKEN
        +M + ++  EE I  E +E I    K  +ER +    +KS   +KH  G+   ++K  R+KK             F QP+Q + L +   ++F +   E 
Subjt:  VMMTETRTMEE-IMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQTQRK--RSKK-------------FSQPQQLVMLNKSFSKTFHKKEKEN

Query:  FA------TSYCIDV-------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVT
                T+  I+V       EEVDNS   +QRTS+FD IKP TT  SVFQR+SM   +EENQCPTST+ R SAF+RLS+STSKK RPSTS FDRLK+T
Subjt:  FA------TSYCIDV-------EEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPSTSIFDRLKVT

Query:  NDQPKRKMDNLELKLFNEVNSSEKLHSSI
        NDQ +R+M +L+ K F+E N  +K+HS +
Subjt:  NDQPKRKMDNLELKLFNEVNSSEKLHSSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGTCTTACATGGGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGC
ATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGGACTATGGAAGAAATAATGGCTG
AGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAGTCAGGTTGAGAAGAAACATATCGCTGGATCAAGTCAA
ACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTC
CTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGGTGAACAGAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCATCCTTCGGTATTCCAAAGAA
TGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCTACATCGAAGAAAAGTCGACCTTCA
ACATCTATTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCAATGAAGTAAACAGCAGCGAGAAGCTTCATAG
TAGCATCCTGTTCTCACGCGCTTCGATGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGCT
TCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCCATATGCTTCGCTGTAGTTCCTTATCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGTAGTTCCTTCTCTCCAA
GTTCGAGGGTTCTTACGTTGTATGCTACTACGTTGTTCCTTCTCCAAGATTGAAGGTTCTCCGTTGCATGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTTGCACG
TGTTGTTATGCTGCGTCGCTGTTGCTTCCTTCACCAAGTTCAAAGGTTCCCACGTTGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTGTTACGTTG
TTTCGCTGTTGCTTCTTTCTCCAAGTTCGAAGGTTCACTCGCTTTGGAAGGTTCCTGTGGCGCTGTTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGACGCTACGCTG
CTTCCTTTTCTGCATTCGAAGGTTTTCATGCTAAGCTGCTTTGTTGTTCCTACTCCAAGTTCAAAGGTTCTGCTTTGTTGTAGACGTTGCAGTAGTAAAGGAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGTCTTACATGGGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGC
ATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGGACTATGGAAGAAATAATGGCTG
AGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAGTCAGGTTGAGAAGAAACATATCGCTGGATCAAGTCAA
ACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTC
CTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGGTGAACAGAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCATCCTTCGGTATTCCAAAGAA
TGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCTACATCGAAGAAAAGTCGACCTTCA
ACATCTATTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCAATGAAGTAAACAGCAGCGAGAAGCTTCATAG
TAGCATCCTGTTCTCACGCGCTTCGATGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCACGCGCT
TCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCCATATGCTTCGCTGTAGTTCCTTATCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGTAGTTCCTTCTCTCCAA
GTTCGAGGGTTCTTACGTTGTATGCTACTACGTTGTTCCTTCTCCAAGATTGAAGGTTCTCCGTTGCATGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTTGCACG
TGTTGTTATGCTGCGTCGCTGTTGCTTCCTTCACCAAGTTCAAAGGTTCCCACGTTGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAAGTGTTACGTTG
TTTCGCTGTTGCTTCTTTCTCCAAGTTCGAAGGTTCACTCGCTTTGGAAGGTTCCTGTGGCGCTGTTTCGCTGTTCATTCTCCAAGTTCGAAGGTTCTGACGCTACGCTG
CTTCCTTTTCTGCATTCGAAGGTTTTCATGCTAAGCTGCTTTGTTGTTCCTACTCCAAGTTCAAAGGTTCTGCTTTGTTGTAGACGTTGCAGTAGTAAAGGAGTCTAA
Protein sequenceShow/hide protein sequence
MNKSYMGSTAHCCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEEIMAEMQEHINTLMKAIEERDSQIEHLKSQVEKKHIAGSSQ
TQRKRSKKFSQPQQLVMLNKSFSKTFHKKEKENFATSYCIDVEEVDNSKNGEQRTSVFDRIKPPTTHPSVFQRMSMVATKEENQCPTSTFTRPSAFQRLSVSTSKKSRPS
TSIFDRLKVTNDQPKRKMDNLELKLFNEVNSSEKLHSSILFSRASMEFLLSKFEGSHAFRCSSFSPSSKVLTRFAAVPSLQIRRFHMLRCSSLSPSSKVLTRFAVVPSLQ
VRGFLRCMLLRCSFSKIEGSPLHAPALLLLQVRRFARVVMLRRCCFLHQVQRFPRCAVVLLPSPSSKVLKCYVVSLLLLSPSSKVHSLWKVPVALFRCSFSKFEGSDATL
LPFLHSKVFMLSCFVVPTPSSKVLLCCRRCSSKGV