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Spg002094 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002094
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:27534934..27537881
RNA-Seq ExpressionSpg002094
SyntenySpg002094
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025355.1 uncharacterized protein E6C27_scaffold1204G00390 [Cucumis melo var. makuwa]3.3e-1236.79Show/hide
Query:  PPLDKGKTMVGEVSS-TLVKEDGSSSGKKGWKRWAKGTLKDVTNVIFVPSSPKHNCLVEMDALPTNEGEAKQLKLMEMDDMFSLYELAGGSNEPRRTKDG
        P  +K  T+  EVS+ T+++    S  KKG   +A+ + K++T             L E  A P  + E  + K +E  D+ +           RRT +G
Subjt:  PPLDKGKTMVGEVSS-TLVKEDGSSSGKKGWKRWAKGTLKDVTNVIFVPSSPKHNCLVEMDALPTNEGEAKQLKLMEMDDMFSLYELAGGSNEPRRTKDG

Query:  FDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ
        FDPK YKL+AK             S EP+QIT K K KVA++ HITVEE  D +EGK+    R+S FDRI  S  R SV QR+ST   +  +Q
Subjt:  FDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ

KAA0031753.1 gag protease polyprotein [Cucumis melo var. makuwa]2.2e-1149.49Show/hide
Query:  RRTKDGFDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ
        RRT +GFDPK YKL+AK             S E ++IT K KAKVA++ HITVEE  D EEGK+    R+S FDRI  S  R SV QR+ST   +  +Q
Subjt:  RRTKDGFDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ

KAA0054152.1 uncharacterized protein E6C27_scaffold131G00760 [Cucumis melo var. makuwa]2.2e-1141.61Show/hide
Query:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD
        +L   S   RRTKDGFDPK YKL+A                                              KSPEPI+ITRK K KV DS HITV+E+D 
Subjt:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD

Query:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVE
         EE KE +  RTSAFDRI   V R+ V +RLS I  E
Subjt:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVE

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]2.4e-1038.62Show/hide
Query:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD
        +L   S   RRTKDGFDPK YKL+A                                              KSPEPI+ITRK K KV DS HITV+E+D 
Subjt:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD

Query:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQHPAS
         EE KE ++ RTS FDRI   V R+ V +RLS    E +     S
Subjt:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQHPAS

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]5.1e-1325.44Show/hide
Query:  MDELTEQWQNMTLTEEEATTIPMPSNIPLLDDSTIQVCVVGKVLSSRLVNSYVFCNVMLSIWNVHRSTRIDPLGDNIF----------------------
        MDE+T+ W++   T +E  T+ +    P+L    +++CVV K+ +S+ +++    +VM S+W VH STR +PLG NI+                      
Subjt:  MDELTEQWQNMTLTEEEATTIPMPSNIPLLDDSTIQVCVVGKVLSSRLVNSYVFCNVMLSIWNVHRSTRIDPLGDNIF----------------------

Query:  ----------------------------INNVPLNFLTPAMAHELGSVLGTVEEVFGE------------------------------------------
                                    I+N+P   ++  MA+ LG+ LG VEE+ G+                                          
Subjt:  ----------------------------INNVPLNFLTPAMAHELGSVLGTVEEVFGE------------------------------------------

Query:  ----DFCYRCGCIGHSHCECFELGSSTAANGLFSYGDWLRVAPFRRMRLN-------GSGEDGQGLDSHRGREHGGLGRGRRR
            DFCY CG IGHS  EC +       N    YGDWLR    ++   +         G  G+G   + GR  GG G  RRR
Subjt:  ----DFCYRCGCIGHSHCECFELGSSTAANGLFSYGDWLRVAPFRRMRLN-------GSGEDGQGLDSHRGREHGGLGRGRRR

TrEMBL top hitse value%identityAlignment
A0A5A7SLL7 Ribonuclease H1.6e-1236.79Show/hide
Query:  PPLDKGKTMVGEVSS-TLVKEDGSSSGKKGWKRWAKGTLKDVTNVIFVPSSPKHNCLVEMDALPTNEGEAKQLKLMEMDDMFSLYELAGGSNEPRRTKDG
        P  +K  T+  EVS+ T+++    S  KKG   +A+ + K++T             L E  A P  + E  + K +E  D+ +           RRT +G
Subjt:  PPLDKGKTMVGEVSS-TLVKEDGSSSGKKGWKRWAKGTLKDVTNVIFVPSSPKHNCLVEMDALPTNEGEAKQLKLMEMDDMFSLYELAGGSNEPRRTKDG

Query:  FDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ
        FDPK YKL+AK             S EP+QIT K K KVA++ HITVEE  D +EGK+    R+S FDRI  S  R SV QR+ST   +  +Q
Subjt:  FDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ

A0A5A7SND9 Gag protease polyprotein1.0e-1149.49Show/hide
Query:  RRTKDGFDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ
        RRT +GFDPK YKL+AK             S E ++IT K KAKVA++ HITVEE  D EEGK+    R+S FDRI  S  R SV QR+ST   +  +Q
Subjt:  RRTKDGFDPKTYKLLAK-------------SPEPIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQ

A0A5A7UEC9 Uncharacterized protein1.0e-1141.61Show/hide
Query:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD
        +L   S   RRTKDGFDPK YKL+A                                              KSPEPI+ITRK K KV DS HITV+E+D 
Subjt:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD

Query:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVE
         EE KE +  RTSAFDRI   V R+ V +RLS I  E
Subjt:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVE

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.2e-1038.62Show/hide
Query:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD
        +L   S   RRTKDGFDPK YKL+A                                              KSPEPI+ITRK K KV DS HITV+E+D 
Subjt:  ELAGGSNEPRRTKDGFDPKTYKLLA----------------------------------------------KSPEPIQITRKEKAKVADSFHITVEEIDD

Query:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQHPAS
         EE KE ++ RTS FDRI   V R+ V +RLS    E +     S
Subjt:  PEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQHPAS

A0A6J1D765 uncharacterized protein LOC1110179022.5e-1325.44Show/hide
Query:  MDELTEQWQNMTLTEEEATTIPMPSNIPLLDDSTIQVCVVGKVLSSRLVNSYVFCNVMLSIWNVHRSTRIDPLGDNIF----------------------
        MDE+T+ W++   T +E  T+ +    P+L    +++CVV K+ +S+ +++    +VM S+W VH STR +PLG NI+                      
Subjt:  MDELTEQWQNMTLTEEEATTIPMPSNIPLLDDSTIQVCVVGKVLSSRLVNSYVFCNVMLSIWNVHRSTRIDPLGDNIF----------------------

Query:  ----------------------------INNVPLNFLTPAMAHELGSVLGTVEEVFGE------------------------------------------
                                    I+N+P   ++  MA+ LG+ LG VEE+ G+                                          
Subjt:  ----------------------------INNVPLNFLTPAMAHELGSVLGTVEEVFGE------------------------------------------

Query:  ----DFCYRCGCIGHSHCECFELGSSTAANGLFSYGDWLRVAPFRRMRLN-------GSGEDGQGLDSHRGREHGGLGRGRRR
            DFCY CG IGHS  EC +       N    YGDWLR    ++   +         G  G+G   + GR  GG G  RRR
Subjt:  ----DFCYRCGCIGHSHCECFELGSSTAANGLFSYGDWLRVAPFRRMRLN-------GSGEDGQGLDSHRGREHGGLGRGRRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAACTCACTGAACAGTGGCAGAATATGACGTTGACAGAGGAGGAAGCGACGACAATCCCCATGCCGTCGAATATTCCCTTGCTTGACGACTCAACCATCCAAGT
TTGCGTCGTTGGAAAGGTCCTCTCGAGTCGGTTAGTGAATTCATATGTCTTTTGCAATGTGATGTTGTCGATTTGGAATGTCCATCGCTCTACTCGGATTGACCCTTTGG
GTGACAACATTTTCATAAACAATGTCCCATTGAATTTTCTTACTCCTGCTATGGCCCATGAACTTGGCAGTGTGCTTGGTACCGTTGAGGAAGTGTTTGGGGAAGATTTC
TGTTATAGGTGTGGTTGTATTGGACACTCTCATTGTGAATGTTTTGAATTGGGTTCCAGTACTGCTGCAAATGGTCTCTTCTCATATGGTGATTGGCTTCGTGTTGCTCC
TTTTAGACGTATGAGACTGAATGGGTCAGGGGAAGATGGCCAGGGTCTTGATAGTCATAGAGGGCGAGAACATGGTGGGCTTGGTAGAGGCAGGAGGCGGGGTCGTGGTC
GAATGGGTCTCTACAAGACGAGTGAGGATTTGGGCAGTGATTTAGTTCAAACTTTTATGGTTGCACTTGTTGTGAATTCTCTGCCTTCTGCCACAACCATCCCCCCTCTT
GATAAAGGGAAGACAATGGTTGGGGAGGTCTCTTCAACGCTTGTGAAAGAGGATGGCTCAAGTTCTGGTAAGAAAGGTTGGAAGAGATGGGCCAAGGGGACTTTGAAAGA
TGTTACAAATGTGATCTTTGTACCTTCATCTCCCAAGCACAATTGTCTTGTCGAGATGGATGCTCTTCCAACCAACGAGGGGGAAGCGAAACAATTGAAGCTTATGGAAA
TGGATGATATGTTTAGTCTGTATGAGCTAGCAGGGGGATCTAATGAACCTAGACGAACAAAAGACGGGTTTGACCCTAAAACATACAAACTATTGGCAAAGTCTCCTGAG
CCAATTCAAATCACAAGAAAAGAGAAAGCAAAAGTTGCAGATTCGTTTCACATTACGGTGGAAGAAATTGATGATCCCGAAGAAGGTAAAGAAAGCGAAGATCACCGGAC
TTCTGCTTTCGATCGCATTGGATCGTCTGTTACACGGTCTTCGGTTTGTCAAAGGTTGAGTACAATTGCAGTAGAGGGTGAAAGTCAGCATCCAGCTTCTGGCTCCCCGT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAACTCACTGAACAGTGGCAGAATATGACGTTGACAGAGGAGGAAGCGACGACAATCCCCATGCCGTCGAATATTCCCTTGCTTGACGACTCAACCATCCAAGT
TTGCGTCGTTGGAAAGGTCCTCTCGAGTCGGTTAGTGAATTCATATGTCTTTTGCAATGTGATGTTGTCGATTTGGAATGTCCATCGCTCTACTCGGATTGACCCTTTGG
GTGACAACATTTTCATAAACAATGTCCCATTGAATTTTCTTACTCCTGCTATGGCCCATGAACTTGGCAGTGTGCTTGGTACCGTTGAGGAAGTGTTTGGGGAAGATTTC
TGTTATAGGTGTGGTTGTATTGGACACTCTCATTGTGAATGTTTTGAATTGGGTTCCAGTACTGCTGCAAATGGTCTCTTCTCATATGGTGATTGGCTTCGTGTTGCTCC
TTTTAGACGTATGAGACTGAATGGGTCAGGGGAAGATGGCCAGGGTCTTGATAGTCATAGAGGGCGAGAACATGGTGGGCTTGGTAGAGGCAGGAGGCGGGGTCGTGGTC
GAATGGGTCTCTACAAGACGAGTGAGGATTTGGGCAGTGATTTAGTTCAAACTTTTATGGTTGCACTTGTTGTGAATTCTCTGCCTTCTGCCACAACCATCCCCCCTCTT
GATAAAGGGAAGACAATGGTTGGGGAGGTCTCTTCAACGCTTGTGAAAGAGGATGGCTCAAGTTCTGGTAAGAAAGGTTGGAAGAGATGGGCCAAGGGGACTTTGAAAGA
TGTTACAAATGTGATCTTTGTACCTTCATCTCCCAAGCACAATTGTCTTGTCGAGATGGATGCTCTTCCAACCAACGAGGGGGAAGCGAAACAATTGAAGCTTATGGAAA
TGGATGATATGTTTAGTCTGTATGAGCTAGCAGGGGGATCTAATGAACCTAGACGAACAAAAGACGGGTTTGACCCTAAAACATACAAACTATTGGCAAAGTCTCCTGAG
CCAATTCAAATCACAAGAAAAGAGAAAGCAAAAGTTGCAGATTCGTTTCACATTACGGTGGAAGAAATTGATGATCCCGAAGAAGGTAAAGAAAGCGAAGATCACCGGAC
TTCTGCTTTCGATCGCATTGGATCGTCTGTTACACGGTCTTCGGTTTGTCAAAGGTTGAGTACAATTGCAGTAGAGGGTGAAAGTCAGCATCCAGCTTCTGGCTCCCCGT
GA
Protein sequenceShow/hide protein sequence
MDELTEQWQNMTLTEEEATTIPMPSNIPLLDDSTIQVCVVGKVLSSRLVNSYVFCNVMLSIWNVHRSTRIDPLGDNIFINNVPLNFLTPAMAHELGSVLGTVEEVFGEDF
CYRCGCIGHSHCECFELGSSTAANGLFSYGDWLRVAPFRRMRLNGSGEDGQGLDSHRGREHGGLGRGRRRGRGRMGLYKTSEDLGSDLVQTFMVALVVNSLPSATTIPPL
DKGKTMVGEVSSTLVKEDGSSSGKKGWKRWAKGTLKDVTNVIFVPSSPKHNCLVEMDALPTNEGEAKQLKLMEMDDMFSLYELAGGSNEPRRTKDGFDPKTYKLLAKSPE
PIQITRKEKAKVADSFHITVEEIDDPEEGKESEDHRTSAFDRIGSSVTRSSVCQRLSTIAVEGESQHPASGSP