CuGenDBv2

Gene ID	Spg002098
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Genome location	scaffold2:25394891..25409983
RNA-Seq Expression	Spg002098
Synteny	Spg002098
Gene Ontology terms	GO:0009416 - response to light stimulus (biological process) GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009522 - photosystem I (cellular component) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR001344 - Chlorophyll A-B binding protein, plant and chromista IPR022796 - Chlorophyll A-B binding protein IPR023329 - Chlorophyll a/b binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6570576.1 hypothetical protein SDJN03_29491, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-47

84.03

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

XP_008456347.1 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo]

8.3e-48

84.87

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Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

XP_022944462.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata]

1.8e-47

84.03

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

XP_022986017.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima]

1.4e-47

84.03

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Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

XP_038901990.1 chlorophyll a-b binding protein of LHCII type 1 [Benincasa hispida]

3.7e-48

84.87

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS  AS L GD R+TMRKTAGKPKP+SSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGD7 Chlorophyll a-b binding protein, chloroplastic

1.2e-47

84.03

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPS   QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

A0A1S3C301 Chlorophyll a-b binding protein, chloroplastic

4.0e-48

84.87

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

A0A5D3DVR3 Chlorophyll a-b binding protein, chloroplastic

4.0e-48

84.87

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

A0A6J1FVQ6 Chlorophyll a-b binding protein, chloroplastic

8.9e-48

84.03

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

A0A6J1J6F4 Chlorophyll a-b binding protein, chloroplastic

6.8e-48

84.03

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

SwissProt top hits

e value

%identity

Alignment

P07369 Chlorophyll a-b binding protein 3C, chloroplastic

2.9e-43

74.79

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MA S+MAL S +   +AVKLS ++S + G+ RVTMRKTA K KP SSGSPWY PD VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI  RWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

P12333 Chlorophyll a-b binding protein, chloroplastic

2.3e-45

76.47

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MA+S+MAL SPSL  +AVKL   AS + G+ R+TMRKTAGKPK V S SPWY PD VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI  RWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

P12469 Chlorophyll a-b binding protein C, chloroplastic

3.7e-43

74.79

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Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAAS+MAL S S   +AVKLS ++S + G+ +VTMRKTA K KPVSS SPWY P+ VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI  RWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

P27495 Chlorophyll a-b binding protein 40, chloroplastic

2.0e-44

76.47

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAAS+MAL SPS   +AVKLS ++S + G+ +VTMRKTA K K VSSGSPWY PD VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI  RWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

P27496 Chlorophyll a-b binding protein 50, chloroplastic

4.9e-43

73.95

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAA++MAL S S   +AVKLS ++S + G+ +VTMRKT  K KP+SSGSPWY PD VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI  RWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

Arabidopsis top hits

e value

%identity

Alignment

AT1G29910.1 chlorophyll A/B binding protein 3

6.5e-43

74.79

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAAS+MAL SP+   +AV LS AAS + G  RVTMRKT  KPK   SGSPWY  D VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFA+NRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

AT1G29920.1 chlorophyll A/B-binding protein 2

6.5e-43

74.79

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAAS+MAL SP+   +AV LS AAS + G  RVTMRKT  KPK   SGSPWY  D VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFA+NRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

AT1G29930.1 chlorophyll A/B binding protein 1

1.7e-43

75.63

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAAS+MAL SP+   +AVKLS AAS + G  RVTMRKT  KPK   SGSPWY  D VKYLGPF  E PSYLTGEFPGDY WDT GLSADPETFA+NRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

AT2G34420.1 photosystem II light harvesting complex gene B1B2

1.2e-41

73.95

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MA+S+MAL SP+   +AVK   AAS + G  RVTMRKT  KPK   SGSPWY  D VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFA+NRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

AT2G34430.1 light-harvesting chlorophyll-protein complex II subunit B1

2.9e-43

74.79

Show/hide

Query:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE
        MAAS+MAL SP+L  +AVKLS AAS +FG  R+TMRK +    P  SGSPWY  D VKYLGPF  EPPSYLTGEFPGDY WDT GLSADPETFA+NRELE
Subjt:  MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELE

Query:  VIQSRWAMLGALGHVFPEL
        VI SRWAMLGALG VFPEL
Subjt:  VIQSRWAMLGALGHVFPEL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAGCTTCATCGATGGCTCTGTTTTCCCCATCTCTGGTCGCCCAAGCCGTGAAATTGTCCCTCGCCGCCTCTTACCTCTTCGGCGACAGCCGTGTCACCATGAGGAA
AACTGCCGGCAAGCCCAAGCCCGTCTCCTCCGGAAGCCCATGGTACGACCCAGATTGCGTCAAGTACTTGGGCCCATTCTTCAGCGAGCCCCCGTCCTATCTGACCGGCG
AGTTCCCCGGCGACTACGACTGGGACACCATCGGCCTCTCCGCCGACCCCGAGACCTTCGCCAAGAACCGCGAGCTCGAAGTGATCCAATCGAGATGGGCCATGCTCGGG
GCTCTTGGCCACGTGTTCCCTGAGCTCCCTCTCGCAACGACGTCAAATTCGACGACGCCGTGTGGTTCAAAGCCGGCTCGCAGATCTTCAGCGAAGGAGGTTGAAACTGG
AGTTGCTATTGAGGGAATGACACTTGAAGGAGGAATTTTCCTTAGATTTGTATGGCGGGTGATCCAACGTGGTGGTGTTCATTGGGAGGAAGAAGAACGCGATTTGGAGC
ATCGTGCCGTTAGTTCTTCGAAATCCATAAAAACAGAGGAAATGCTGGAATTTGCCCAGAAATGCGACTGGGAAGGCAAAATGAAATGCGATAGCATTTCTGGAAAAACA
GAGGCAGTTCCGAGTCTTCTGCGGGTCGTTGAAAGTCAAGAGTCAAATCTAGAGAGTCTTATGAAGGAGTACATGGCAAGAAACGATGCTGCAGTTAGAAATTTGGAAGT
ACAGTGTCGCAACGTCATCGCGACGCGGAGCTGCCGACGTCCTTCCCTAAGGGTCTCTTTCGAGAACTCGTCAGAATCAATATGGGTCTTCGAACCGGAGCGGCGACGGC
GGAACTATGCAGGCTGCGGTAGTGACGGCGACGTTCGTTGGGTAGAGGAGAGCTTGGAGAAACGGTTGAGGGAAAAGGGGAATGGGTTGAGAAAGAGGGGGAAAGAGTGG
AAGACAAAGAATCAAACCATATTGGGGAAGGGCTTTAAAGATGAAGAAGCTCATGTTTCTGTGATTGACCTGGACACAGCGTCGCAATGCTATGCCTTCAGATATGGAAT
GAATCTCTCGGATCAACATAGCGTCGAGACGCTATGGGTGCAGCGTCGAGACGCTGCAGCTTCTGCTTGGCGCCCACGAAATTTCCTTATTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLG
ALGHVFPELPLATTSNSTTPCGSKPARRSSAKEVETGVAIEGMTLEGGIFLRFVWRVIQRGGVHWEEEERDLEHRAVSSSKSIKTEEMLEFAQKCDWEGKMKCDSISGKT
EAVPSLLRVVESQESNLESLMKEYMARNDAAVRNLEVQCRNVIATRSCRRPSLRVSFENSSESIWVFEPERRRRNYAGCGSDGDVRWVEESLEKRLREKGNGLRKRGKEW
KTKNQTILGKGFKDEEAHVSVIDLDTASQCYAFRYGMNLSDQHSVETLWVQRRDAAASAWRPRNFLI

Spg002098 (gene) of Sponge gourd (cylindrica) v1 genome