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Spg002112 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002112
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationscaffold2:27484940..27487352
RNA-Seq ExpressionSpg002112
SyntenySpg002112
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145141.1 uncharacterized protein LOC111014656 [Momordica charantia]6.8e-3754.61Show/hide
Query:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV
        V ++ +  F+  DG+L   V+L T+TCT REF+Y+++PCSHAIA  + R I+ +TLC   Y V+S + AYA+PI P+G  S WK SP F +++V PP++V
Subjt:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV

Query:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN
         RVGRRQT+RI S GEVR  RKC+RCG  GHNRKTCR+P+N
Subjt:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN

XP_022154803.1 uncharacterized protein LOC111021969 [Momordica charantia]8.9e-3752.38Show/hide
Query:  QYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLP
        +Y  V  +   EF+  DG    RVN++++TCTC++F YYE+PCSHAIA    R+I  HTLCS  Y +D+LI AY +P+ PLG E +W     +    + P
Subjt:  QYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLP

Query:  PRRVPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS
        PR VPRVGR QT RI S+GEVR V KC RCGN GHN KTCRQP+  +
Subjt:  PRRVPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS

XP_022154803.1 uncharacterized protein LOC111021969 [Momordica charantia]1.7e-0332Show/hide
Query:  GLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSR--APAFVIRNDENPNTFL
        G WNE    YEGG + G ++D G  Y D +S ++R+T I+ + F+++++C+ +   +   P F I +D +   +L
Subjt:  GLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSR--APAFVIRNDENPNTFL

XP_022154803.1 uncharacterized protein LOC111021969 [Momordica charantia]1.2e-3653.9Show/hide
Query:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV
        V ++ +  F+  DG+L G V+  ++TCTCREF+Y+++ CSHAIAA + R I+ +TLC   Y V+S + AYA+PI P+G  S WK SP F +++V PP++V
Subjt:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV

Query:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN
         RVGRRQT+RI S GEVR   KC+RCG  GHNRKTCR+P+N
Subjt:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN

XP_022156122.1 uncharacterized protein LOC111023087 [Momordica charantia]1.2e-3653.9Show/hide
Query:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV
        V ++ +  F+  DG+L G V+L ++TCTCREF+Y+++ CS AIAA + R I+ +TLC  VY V+S + AYA+PI P+G  S WK SP F +++V PP++V
Subjt:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV

Query:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN
         RVGRRQT++I S GEVR  R C+RCG  GHNRKTCR+P+N
Subjt:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN

XP_038895917.1 uncharacterized protein LOC120084090 [Benincasa hispida]1.6e-3853.47Show/hide
Query:  EVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRR
        EV  + + EF+  DG L GR N+HTR CTC +F+YYE+PCSH IAAC  ++ID  +LCS VY ++S++ AYA+PI+  GH S WK+S  F +VE LPP+R
Subjt:  EVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRR

Query:  VPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS
        VPR+GR +T R  S  E R V +C+RCG +GHN+KTC Q  N +
Subjt:  VPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS

TrEMBL top hitse value%identityAlignment
A0A6J1CQH9 protein FAR1-RELATED SEQUENCE 4-like7.4e-3751.75Show/hide
Query:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV
        V ++ +      DG+L G V+ ++RTC+CREF+Y+++PCSHAIA    R+I+ +TLC   Y  +S + AYA+PI P+GH S W  SP F D  V  P  V
Subjt:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV

Query:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS
        PRVGRR+T+RI+S GEVR  RKC RCG  GHNRKTC +P+N +
Subjt:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS

A0A6J1CVG8 uncharacterized protein LOC1110146563.3e-3754.61Show/hide
Query:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV
        V ++ +  F+  DG+L   V+L T+TCT REF+Y+++PCSHAIA  + R I+ +TLC   Y V+S + AYA+PI P+G  S WK SP F +++V PP++V
Subjt:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV

Query:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN
         RVGRRQT+RI S GEVR  RKC+RCG  GHNRKTCR+P+N
Subjt:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN

A0A6J1DLB0 uncharacterized protein LOC1110219694.3e-3752.38Show/hide
Query:  QYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLP
        +Y  V  +   EF+  DG    RVN++++TCTC++F YYE+PCSHAIA    R+I  HTLCS  Y +D+LI AY +P+ PLG E +W     +    + P
Subjt:  QYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLP

Query:  PRRVPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS
        PR VPRVGR QT RI S+GEVR V KC RCGN GHN KTCRQP+  +
Subjt:  PRRVPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS

A0A6J1DLB0 uncharacterized protein LOC1110219698.2e-0432Show/hide
Query:  GLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSR--APAFVIRNDENPNTFL
        G WNE    YEGG + G ++D G  Y D +S ++R+T I+ + F+++++C+ +   +   P F I +D +   +L
Subjt:  GLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSR--APAFVIRNDENPNTFL

A0A6J1DLB0 uncharacterized protein LOC1110219695.6e-3753.9Show/hide
Query:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV
        V ++ +  F+  DG+L G V+  ++TCTCREF+Y+++ CSHAIAA + R I+ +TLC   Y V+S + AYA+PI P+G  S WK SP F +++V PP++V
Subjt:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV

Query:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN
         RVGRRQT+RI S GEVR   KC+RCG  GHNRKTCR+P+N
Subjt:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN

A0A6J1DR67 uncharacterized protein LOC1110230875.6e-3753.9Show/hide
Query:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV
        V ++ +  F+  DG+L G V+L ++TCTCREF+Y+++ CS AIAA + R I+ +TLC  VY V+S + AYA+PI P+G  S WK SP F +++V PP++V
Subjt:  VPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRV

Query:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN
         RVGRRQT++I S GEVR  R C+RCG  GHNRKTCR+P+N
Subjt:  PRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49920.1 MuDR family transposase2.5e-0532.5Show/hide
Query:  GRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPP
        G V L+  TCTC EF+  + PC HA+A C    I+        Y V+     Y+    P+   S W   P+ + V  L P
Subjt:  GRVNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPP

AT1G64260.1 MuDR family transposase7.3e-0532.81Show/hide
Query:  VNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEW
        V L+  TCTCR+F+ Y+ PC HA+A      I+        Y V+     YA    P+   + W
Subjt:  VNLHTRTCTCREFEYYELPCSHAIAACTYRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTGTGTGGGTTTGTTATGGTGGTCTGTGGAATGAGAGGGAAAATGAATATGAGGGTGGAGAGTTGACGGGTTTCGACATAGACATTGGTACTGCATACAGTGA
CTTCTTAAGTCGATTATATAGATTAACCAGTATAAGTTCAGAGGAATTTGACCTTATAATAAGATGTGTAGTCCAGTTGGTGTCTAGGGCCCCTGCGTTTGTTATTAGGA
ACGATGAAAACCCTAACACCTTCTTGACGTGGATTAAGGTGGAGCCGAATTTATCATCGACATCGGTCCCAAACAATATACCATCGGCATCTACATCCTTCCCATGCGAT
GAATCCAAAAATATTCCTGTGTATAACTTGGGGGATGATGAAGACCATGGTAGTGAACTTTATGGTGGCCAAGATTGGGGGGAATACGAAGATTATGAGGAGTACGGAGA
TGATGAGGACATAGACACAGAGGTTGATGTAGCTGTGGGAGACGACGATGAGGAAGAGATTCACAAACAGTACACTGAGGTTCCTTCTGTGCCTGAACAGGAGTTTGATT
TCGAGGACGGACATTTGGGTGGACGTGTCAACCTTCACACTAGAACATGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCTCATGCGATCGCTGCATGCACT
TATCGACATATAGACCATCATACACTTTGTTCCAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGGAGTGGAA
GAGGTCACCTCAATTTTTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTCAGACGTTGAGAATTTCGTCTATGGGAGAAGTGCGGCATGTTC
GGAAATGCAACCGGTGCGGGAATAGAGGTCATAACAGAAAAACATGCAGACAACCAGTGAATAATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGTGTGTGGGTTTGTTATGGTGGTCTGTGGAATGAGAGGGAAAATGAATATGAGGGTGGAGAGTTGACGGGTTTCGACATAGACATTGGTACTGCATACAGTGA
CTTCTTAAGTCGATTATATAGATTAACCAGTATAAGTTCAGAGGAATTTGACCTTATAATAAGATGTGTAGTCCAGTTGGTGTCTAGGGCCCCTGCGTTTGTTATTAGGA
ACGATGAAAACCCTAACACCTTCTTGACGTGGATTAAGGTGGAGCCGAATTTATCATCGACATCGGTCCCAAACAATATACCATCGGCATCTACATCCTTCCCATGCGAT
GAATCCAAAAATATTCCTGTGTATAACTTGGGGGATGATGAAGACCATGGTAGTGAACTTTATGGTGGCCAAGATTGGGGGGAATACGAAGATTATGAGGAGTACGGAGA
TGATGAGGACATAGACACAGAGGTTGATGTAGCTGTGGGAGACGACGATGAGGAAGAGATTCACAAACAGTACACTGAGGTTCCTTCTGTGCCTGAACAGGAGTTTGATT
TCGAGGACGGACATTTGGGTGGACGTGTCAACCTTCACACTAGAACATGCACCTGTCGTGAATTTGAGTATTACGAACTTCCATGCTCTCATGCGATCGCTGCATGCACT
TATCGACATATAGACCATCATACACTTTGTTCCAGAGTCTACCATGTGGACTCTTTGATAGATGCATATGCACAGCCCATACAACCCCTTGGGCATGAGTCGGAGTGGAA
GAGGTCACCTCAATTTTTCGATGTGGAAGTCTTGCCTCCTCGAAGAGTGCCTAGAGTTGGTCGTCGTCAGACGTTGAGAATTTCGTCTATGGGAGAAGTGCGGCATGTTC
GGAAATGCAACCGGTGCGGGAATAGAGGTCATAACAGAAAAACATGCAGACAACCAGTGAATAATTCTTGA
Protein sequenceShow/hide protein sequence
MPRVWVCYGGLWNERENEYEGGELTGFDIDIGTAYSDFLSRLYRLTSISSEEFDLIIRCVVQLVSRAPAFVIRNDENPNTFLTWIKVEPNLSSTSVPNNIPSASTSFPCD
ESKNIPVYNLGDDEDHGSELYGGQDWGEYEDYEEYGDDEDIDTEVDVAVGDDDEEEIHKQYTEVPSVPEQEFDFEDGHLGGRVNLHTRTCTCREFEYYELPCSHAIAACT
YRHIDHHTLCSRVYHVDSLIDAYAQPIQPLGHESEWKRSPQFFDVEVLPPRRVPRVGRRQTLRISSMGEVRHVRKCNRCGNRGHNRKTCRQPVNNS