; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg002113 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002113
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit A-like
Genome locationscaffold2:27129765..27133626
RNA-Seq ExpressionSpg002113
SyntenySpg002113
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013955 - Replication factor A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5586050.1 hypothetical protein H5410_046484 [Solanum commersonii]5.7e-1535.42Show/hide
Query:  EGKLYQFNIT---IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKED
        E  +Y+F  T   I+NKD PW+  CK C+ +V     +    CNNCN   V++  +Y L+L + DG+  A +  FEAA+ I+GCS+  Y    L +KKE+
Subjt:  EGKLYQFNIT---IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKED

Query:  SKIYRNFILTQGKTYKFLIRMDKSEGDRSKGHFVVQEINKAQVE
           YR  +L++ K + FL+R+D ++ +  +   + +EI++A+ E
Subjt:  SKIYRNFILTQGKTYKFLIRMDKSEGDRSKGHFVVQEINKAQVE

OIT08014.1 hypothetical protein A4A49_30234 [Nicotiana attenuata]1.8e-1631.25Show/hide
Query:  LMLWNDLATNEGSELEERIIDNPIILAFNLKVDMYEGKL-----------YQFNIT-IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRK
        + LW D A N+G  LE+   D PI+   +++V +Y+G             ++  IT I+NKD PW+  CK C  +V  +  +    C +CN   V +  +
Subjt:  LMLWNDLATNEGSELEERIIDNPIILAFNLKVDMYEGKL-----------YQFNIT-IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRK

Query:  YMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGKTYKFLIRMDKSEGDRSKGHFVVQEINKAQVEECDALEVLHVKK
        Y L++ +S G+    +  F+AAE + GC V  Y   I   KKE+S  YR  +L++ K + FL+++D ++   S    + QEI++ Q  +   ++VL   K
Subjt:  YMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGKTYKFLIRMDKSEGDRSKGHFVVQEINKAQVEECDALEVLHVKK

Query:  --KIKKER
          KI+++R
Subjt:  --KIKKER

XP_016500091.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana tabacum]7.4e-1532.95Show/hide
Query:  NLKVDMYEGK---LYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYA
        ++K D ++ K    ++FN     I+NKD PW+  CK C  +V  +    +  C+ C    V +  KY+LKL + D +   ++T FE+   ++GC V+ Y 
Subjt:  NLKVDMYEGK---LYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYA

Query:  TQILEMKKEDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV---LHVKKKIKKER
         Q +  KKE+SK YR  +L++ K + FL+++D K+ GDR    F+ +EI   +VE+  A+E+   +  +  IKK +
Subjt:  TQILEMKKEDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV---LHVKKKIKKER

XP_020253860.1 replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]5.7e-1526.87Show/hide
Query:  PIKLMLWNDLATNEGSELEERIIDNPIILAFNLKVDMYEGK-----------------------------------------------------------
        P++  L+ DLATNEGS LE  I   P+I   + K+ +Y+G                                                            
Subjt:  PIKLMLWNDLATNEGSELEERIIDNPIILAFNLKVDMYEGK-----------------------------------------------------------

Query:  --------LYQFNI-TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQF-IRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMK
                 ++ NI TI+N+ +PWF  CK C+ +V  + S++  + + C  ++   I +Y++K+++ +G   A +T F+ AE ++GC    + T+  E K
Subjt:  --------LYQFNI-TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQF-IRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMK

Query:  KEDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEIN-----KAQVEECDALEVLHVKKKIK
           S  Y+ F+L+ GKT+KFL+++D K++ +R +G+ + QEI         V++ DA   L  KKKIK
Subjt:  KEDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEIN-----KAQVEECDALEVLHVKKKIK

XP_020262051.1 uncharacterized protein LOC109838035 isoform X1 [Asparagus officinalis]1.8e-1334.42Show/hide
Query:  IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQ-FIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGK
        I+N+ + W+  CK CN +V   G      C NC H+ +  I +Y++K+I+ D   +A +T F+AAE ++GC    +   I E K   S  ++ F+L  GK
Subjt:  IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQ-FIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGK

Query:  TYKFLIRMDK-SEGDRSKGHFVVQEIN-----KAQVEECDALEVLHVKKKIKKE
         YKFL ++D+ S+ +R++G  + QEI         +++ D +  L  KKKIK E
Subjt:  TYKFLIRMDK-SEGDRSKGHFVVQEIN-----KAQVEECDALEVLHVKKKIKKE

TrEMBL top hitse value%identityAlignment
A0A1J6IT36 Rep_fac-A_C domain-containing protein8.5e-1731.25Show/hide
Query:  LMLWNDLATNEGSELEERIIDNPIILAFNLKVDMYEGKL-----------YQFNIT-IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRK
        + LW D A N+G  LE+   D PI+   +++V +Y+G             ++  IT I+NKD PW+  CK C  +V  +  +    C +CN   V +  +
Subjt:  LMLWNDLATNEGSELEERIIDNPIILAFNLKVDMYEGKL-----------YQFNIT-IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRK

Query:  YMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGKTYKFLIRMDKSEGDRSKGHFVVQEINKAQVEECDALEVLHVKK
        Y L++ +S G+    +  F+AAE + GC V  Y   I   KKE+S  YR  +L++ K + FL+++D ++   S    + QEI++ Q  +   ++VL   K
Subjt:  YMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGKTYKFLIRMDKSEGDRSKGHFVVQEINKAQVEECDALEVLHVKK

Query:  --KIKKER
          KI+++R
Subjt:  --KIKKER

A0A1J6KWZ0 Rep_fac-A_C domain-containing protein3.4e-1333.11Show/hide
Query:  IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGKT
        I+NKD+PW+  C  C  +V  +    +  C  C   V++  +Y+LKL + D +   +IT FEA + ++GC V  Y   I   KKE+SK YR  + ++ K 
Subjt:  IVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGKT

Query:  YKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV----LHVKKKIKK
        + FL+++D +  GDR+    + +E++  +V + DA+E+    +   K IKK
Subjt:  YKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV----LHVKKKIKK

A0A1S4BU38 replication protein A 70 kDa DNA-binding subunit B-like2.0e-1331.95Show/hide
Query:  DMYEGKLYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKK
        D  E    +FN+    I+N D+PW+  CK C  +V  +    +  C  C   V++  +Y+LKL + D +   +IT FEA + ++GC V+ Y   I   KK
Subjt:  DMYEGKLYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKK

Query:  EDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV----LHVKKKIKKER
        E+SK YR  + ++ K + FL+++D +  GDR     + +E++  +V + DA+E+    +   K IKK +
Subjt:  EDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV----LHVKKKIKKER

A0A1S4CG46 replication protein A 70 kDa DNA-binding subunit A-like3.6e-1532.95Show/hide
Query:  NLKVDMYEGK---LYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYA
        ++K D ++ K    ++FN     I+NKD PW+  CK C  +V  +    +  C+ C    V +  KY+LKL + D +   ++T FE+   ++GC V+ Y 
Subjt:  NLKVDMYEGK---LYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCN-HLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYA

Query:  TQILEMKKEDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV---LHVKKKIKKER
         Q +  KKE+SK YR  +L++ K + FL+++D K+ GDR    F+ +EI   +VE+  A+E+   +  +  IKK +
Subjt:  TQILEMKKEDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV---LHVKKKIKKER

A0A1U7W7M5 replication protein A 70 kDa DNA-binding subunit B-like2.0e-1331.95Show/hide
Query:  DMYEGKLYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKK
        D  E    +FN+    I+N D+PW+  CK C  +V  +    +  C  C   V++  +Y+LKL + D +   +IT FEA + ++GC V+ Y   I   KK
Subjt:  DMYEGKLYQFNI---TIVNKDNPWFEKCKLCNHRVYPNGSQKMTHCNNCNHLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKK

Query:  EDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV----LHVKKKIKKER
        E+SK YR  + ++ K + FL+++D +  GDR     + +E++  +V + DA+E+    +   K IKK +
Subjt:  EDSKIYRNFILTQGKTYKFLIRMD-KSEGDRSKGHFVVQEINKAQVEECDALEV----LHVKKKIKKER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38450.1 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597)4.3e-0559.38Show/hide
Query:  PLADMVSDCVKQWFQDTLKEANADDTAMQVLI
        PL+ +VSDC K+WF+DTL+EA A +  MQVL+
Subjt:  PLADMVSDCVKQWFQDTLKEANADDTAMQVLI

AT5G05360.1 unknown protein5.5e-0863.16Show/hide
Query:  DKKNRTPLADMVSDCVKQWFQDTLKEANADDTAMQVLI
        D  NR PLA +V DCV++WFQDTLKEA + D  MQVL+
Subjt:  DKKNRTPLADMVSDCVKQWFQDTLKEANADDTAMQVLI

AT5G05360.2 unknown protein5.5e-0863.16Show/hide
Query:  DKKNRTPLADMVSDCVKQWFQDTLKEANADDTAMQVLI
        D  NR PLA +V DCV++WFQDTLKEA + D  MQVL+
Subjt:  DKKNRTPLADMVSDCVKQWFQDTLKEANADDTAMQVLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGAAGAATCGGACTCCGCTTGCTGACATGGTGTCGGACTGCGTCAAGCAGTGGTTCCAGGACACACTCAAGGAGGCCAACGCCGACGACACGGCGATGCAGGT
CTTGATTTTGTTGGAATTGCGTTCTCTTTGCAAGCCAATTAAACTGATGCTATGGAATGATTTGGCTACTAATGAAGGTTCAGAATTAGAAGAACGAATTATTGACAACC
CAATAATTTTAGCATTCAATCTTAAGGTAGATATGTATGAAGGTAAGCTTTACCAATTCAATATAACAATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTT
TGCAACCATAGAGTTTACCCCAATGGAAGTCAGAAAATGACTCACTGTAACAATTGCAACCATCTTGTCCAATTCATTAGAAAATATATGTTAAAGCTTATAATTTCTGA
TGGACAAATGACTGCACATATAACTGCTTTTGAGGCTGCAGAAGTCATAGTCGGATGTAGTGTTTCCCATTATGCAACCCAAATTTTGGAGATGAAGAAGGAGGATTCTA
AAATTTATCGCAATTTCATCCTCACACAAGGAAAAACTTACAAGTTCCTCATACGCATGGACAAGTCTGAAGGAGATCGATCAAAGGGGCATTTTGTGGTTCAAGAGATA
AATAAAGCACAAGTTGAAGAATGTGACGCTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAAAAGAAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGAAGAATCGGACTCCGCTTGCTGACATGGTGTCGGACTGCGTCAAGCAGTGGTTCCAGGACACACTCAAGGAGGCCAACGCCGACGACACGGCGATGCAGGT
CTTGATTTTGTTGGAATTGCGTTCTCTTTGCAAGCCAATTAAACTGATGCTATGGAATGATTTGGCTACTAATGAAGGTTCAGAATTAGAAGAACGAATTATTGACAACC
CAATAATTTTAGCATTCAATCTTAAGGTAGATATGTATGAAGGTAAGCTTTACCAATTCAATATAACAATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTT
TGCAACCATAGAGTTTACCCCAATGGAAGTCAGAAAATGACTCACTGTAACAATTGCAACCATCTTGTCCAATTCATTAGAAAATATATGTTAAAGCTTATAATTTCTGA
TGGACAAATGACTGCACATATAACTGCTTTTGAGGCTGCAGAAGTCATAGTCGGATGTAGTGTTTCCCATTATGCAACCCAAATTTTGGAGATGAAGAAGGAGGATTCTA
AAATTTATCGCAATTTCATCCTCACACAAGGAAAAACTTACAAGTTCCTCATACGCATGGACAAGTCTGAAGGAGATCGATCAAAGGGGCATTTTGTGGTTCAAGAGATA
AATAAAGCACAAGTTGAAGAATGTGACGCTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAAAAGAAAGATAG
Protein sequenceShow/hide protein sequence
MDKKNRTPLADMVSDCVKQWFQDTLKEANADDTAMQVLILLELRSLCKPIKLMLWNDLATNEGSELEERIIDNPIILAFNLKVDMYEGKLYQFNITIVNKDNPWFEKCKL
CNHRVYPNGSQKMTHCNNCNHLVQFIRKYMLKLIISDGQMTAHITAFEAAEVIVGCSVSHYATQILEMKKEDSKIYRNFILTQGKTYKFLIRMDKSEGDRSKGHFVVQEI
NKAQVEECDALEVLHVKKKIKKER