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Spg002115 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002115
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:26914991..26921602
RNA-Seq ExpressionSpg002115
SyntenySpg002115
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2255.47Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED
        PRGNR GLQT EL K                  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV++   +LF KPS  RA   V    EG       D
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED

Query:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA
        DV WLHAIFR K AGGPGGGVT  +S++
Subjt:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.8e-2261.54Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGP
        PRGNR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++   +LF KPS VR    V    EG       DD+ WLHA+F  K AG P
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]6.4e-2246.71Show/hide
Query:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSS
        I+  REPRI      G          F F +              PRGNRS LQT EL KT                 VEIELPVPDTLPTSAES  S+S
Subjt:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSS

Query:  STWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGPGGGVT
        STW+ELY E V++   +LF KPS VRA   V    EG       DDV WLH +FR K+AGGPGGGVT
Subjt:  STWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.1e-2047.86Show/hide
Query:  FFRPRGNRSGLQTRELAKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEE
        +  PRGNR  LQT EL KTV                IELPVPDTLPTSAESS S+SSTW+ELY ESV++     F+    +     V     G       
Subjt:  FFRPRGNRSGLQTRELAKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEE

Query:  DDVRWLHAIFRTKLAGGPGGGVTTWRSLAGSSSFGPVSER
        DDV WLHA+FR K  GGPGGGVTTW S          SER
Subjt:  DDVRWLHAIFRTKLAGGPGGGVTTWRSLAGSSSFGPVSER

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2255.47Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED
        PRGNR GLQT EL K                  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV++   +LF KPS  RA   V    EG       D
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED

Query:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA
        DV WLHAIFR K AGGPGGGVT  +S++
Subjt:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.1e-2255.47Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED
        PRGNR GLQT EL K                  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV++   +LF KPS  RA   V    EG       D
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED

Query:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA
        DV WLHAIFR K AGGPGGGVT  +S++
Subjt:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA

A0A5A7UAH6 CCHC-type domain-containing protein1.8e-2261.54Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGP
        PRGNR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++   +LF KPS VR    V    EG       DD+ WLHA+F  K AG P
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV

A0A5A7VIY9 Uncharacterized protein3.1e-2246.71Show/hide
Query:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSS
        I+  REPRI      G          F F +              PRGNRS LQT EL KT                 VEIELPVPDTLPTSAES  S+S
Subjt:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSGLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSS

Query:  STWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGPGGGVT
        STW+ELY E V++   +LF KPS VRA   V    EG       DDV WLH +FR K+AGGPGGGVT
Subjt:  STWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.0e-2047.86Show/hide
Query:  FFRPRGNRSGLQTRELAKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEE
        +  PRGNR  LQT EL KTV                IELPVPDTLPTSAESS S+SSTW+ELY ESV++     F+    +     V     G       
Subjt:  FFRPRGNRSGLQTRELAKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEE

Query:  DDVRWLHAIFRTKLAGGPGGGVTTWRSLAGSSSFGPVSER
        DDV WLHA+FR K  GGPGGGVTTW S          SER
Subjt:  DDVRWLHAIFRTKLAGGPGGGVTTWRSLAGSSSFGPVSER

A0A5D3DR18 Gag/pol protein1.1e-2255.47Show/hide
Query:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED
        PRGNR GLQT EL K                  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV++   +LF KPS  RA   V    EG       D
Subjt:  PRGNRSGLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEED

Query:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA
        DV WLHAIFR K AGGPGGGVT  +S++
Subjt:  DVRWLHAIFRTKLAGGPGGGVTTWRSLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAACACCGGCTTGCCATCTACTTTCAATCGCCGACCTTCGCGCTTTCGAGCTCAACATCTTCAGATCTACTTGCGGCTTGCGATCGGAAAATCGAGAGAGAGAG
GCCGTCGGATGAAGAAACATTGAGGAAGACGACTTTGGGTGGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAA
TCGGTTGGGAATCGCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTTATTTTCCAAACCGAGTTATGT
CAGGGCGACACCTCGTGTTCAAACGTTCCAGGAGGGTCAACGAGTATCGTTCGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTC
CGGGAGGAGGTGTGACAACTTGGCGTTCTTTGGCTGGTTCGAGCAGTTTTGGTCCGGTTTCTGAGCGGCTGAAGGCTGTTAGGATAGAATTTTATCGAAAACGCAACAAC
CTGCTTGTGCGAACACCACCAATGGGTTACATCGGTATACCTCTAAGACTTCTTGAAGCAGGAGACTGGTGGGAGTCTTTCAGGAGAGATCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAACACCGGCTTGCCATCTACTTTCAATCGCCGACCTTCGCGCTTTCGAGCTCAACATCTTCAGATCTACTTGCGGCTTGCGATCGGAAAATCGAGAGAGAGAG
GCCGTCGGATGAAGAAACATTGAGGAAGACGACTTTGGGTGGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAA
TCGGTTGGGAATCGCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTTATTTTCCAAACCGAGTTATGT
CAGGGCGACACCTCGTGTTCAAACGTTCCAGGAGGGTCAACGAGTATCGTTCGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTC
CGGGAGGAGGTGTGACAACTTGGCGTTCTTTGGCTGGTTCGAGCAGTTTTGGTCCGGTTTCTGAGCGGCTGAAGGCTGTTAGGATAGAATTTTATCGAAAACGCAACAAC
CTGCTTGTGCGAACACCACCAATGGGTTACATCGGTATACCTCTAAGACTTCTTGAAGCAGGAGACTGGTGGGAGTCTTTCAGGAGAGATCTCTGA
Protein sequenceShow/hide protein sequence
MKKHRLAIYFQSPTFALSSSTSSDLLAACDRKIERERPSDEETLRKTTLGGRKIKGSREPRICVVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTVEIELPVPDT
LPTSAESSRSSSSTWVELYIESVYIVNVLLFSKPSYVRATPRVQTFQEGQRVSFEEDDVRWLHAIFRTKLAGGPGGGVTTWRSLAGSSSFGPVSERLKAVRIEFYRKRNN
LLVRTPPMGYIGIPLRLLEAGDWWESFRRDL