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Spg002127 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg002127
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:26028780..26030889
RNA-Seq ExpressionSpg002127
SyntenySpg002127
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1453.68Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH
        LVEIELPV D LP SAESSR++SSTW+ELY E  +V+   +V L+                 DDV WLHAIFRAK AGGPGGGVT  Y+ +   H
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-1351.65Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTIL
        +VEIELPV DTLP SAESS ++SSTW+ELY E                     F+V  G    +  DDV WLHA+FRAK  GGPGGGVT L
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTIL

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1466.67Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPV DTLP SAESS ++SSTW+ELY+EF   E   ++  + EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1453.68Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH
        LVEIELPV D LP SAESSR++SSTW+ELY E  +V+   +V L+                 DDV WLHAIFRAK AGGPGGGVT  Y+ +   H
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1466.67Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPV DTLP SAESS ++SSTW+ELY+EF   E   ++  + EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.7e-1453.68Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH
        LVEIELPV D LP SAESSR++SSTW+ELY E  +V+   +V L+                 DDV WLHAIFRAK AGGPGGGVT  Y+ +   H
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH

A0A5A7V9N3 Reverse transcriptase2.5e-1351.65Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTIL
        +VEIELPV DTLP SAESS ++SSTW+ELY E                     F+V  G    +  DDV WLHA+FRAK  GGPGGGVT L
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTIL

A0A5A7VMG9 Reverse transcriptase5.8e-1566.67Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPV DTLP SAESS ++SSTW+ELY+EF   E   ++  + EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV

A0A5D3BTP3 Reverse transcriptase1.7e-1453.68Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH
        LVEIELPV D LP SAESSR++SSTW+ELY E  +V+   +V L+                 DDV WLHAIFRAK AGGPGGGVT  Y+ +   H
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRH

A0A5D3DX39 Reverse transcriptase5.8e-1566.67Show/hide
Query:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV
        +VEIELPV DTLP SAESS ++SSTW+ELY+EF   E   ++  + EDDV WLHA+FRAK AGGPGGGV
Subjt:  LVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAGCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTTCAACGTTCA
GGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGGTGTGACAATTTTATACCGCA
AGCGTACGGGTCGTCACAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAGCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTTCAACGTTCA
GGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGGTGTGACAATTTTATACCGCA
AGCGTACGGGTCGTCACAAGTAA
Protein sequenceShow/hide protein sequence
MLVEIELPVLDTLPASAESSRASSSTWVELYIEFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTILYRKRTGRHK